Factsheet for Zm00001d014568_P023

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20701	Sorghum	plastid	92.29	92.54
Os06t0691000-01	Rice	plastid	71.57	71.82
TraesCS7B01G335900.1	Wheat	plastid	70.5	67.98
TraesCS7A01G436200.3	Wheat	plastid	70.33	67.75
TraesCS7D01G426800.1	Wheat	plastid	70.24	67.49
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	66.52	64.02
GSMUA_Achr10P...	Banana	nucleus, plastid	18.87	47.12
CDY39397	Canola	plastid	41.36	44.18
CDY60654	Canola	plastid	41.28	44.09
Solyc01g107510.2.1	Tomato	nucleus	39.95	43.16
KRH77949	Soybean	plastid	42.52	43.05
VIT_03s0091g00200.t01	Wine grape	plastid	44.38	42.64
AT5G44750.2	Thale cress	plastid	41.45	42.35
Bra025106.1-P	Field mustard	plastid	40.66	41.58
GSMUA_Achr10P...	Banana	nucleus	24.54	39.18
Zm00001d053264_P001	Maize	cytosol	7.0	22.64
Zm00001d019198_P001	Maize	cytosol	4.96	22.4
Zm00001d046782_P001	Maize	cytosol	4.96	22.4
Zm00001d002308_P001	Maize	cytosol	4.78	21.69
Zm00001d023711_P001	Maize	nucleus	4.34	21.49
Zm00001d013729_P003	Maize	nucleus	11.69	19.47
Zm00001d037012_P001	Maize	cytosol	3.63	18.98
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	8.06	18.2
Zm00001d043404_P001	Maize	nucleus	10.54	17.6
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	7.44	14.81
Zm00001d051953_P002	Maize	nucleus	7.35	14.77
Zm00001d014511_P002	Maize	nucleus	7.17	14.14
Zm00001d044720_P002	Maize	nucleus	6.55	13.91

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	EntrezGene:103626355	MapMan:14.2.5	Gene3D:2.30.40.20
Gene3D:3.30.1490.100	Gene3D:3.30.70.270	Gene3D:3.40.50.10190	UniProt:A0A1D6GU80	ProteinID:AQK66547.1	InterPro:BRCT_dom
InterPro:BRCT_dom_sf	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987
GO:GO:0010224	GO:GO:0016740	GO:GO:0016779	GO:GO:0042276	GO:GO:0071897	InterPro:IPR001126
InterPro:IPR001357	InterPro:IPR036420	InterPro:IPR036775	PFAM:PF00817	PFAM:PF11799	PFAM:PF16589
PIRSF:PIRSF036573	PFscan:PS50172	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF12	InterPro:REV1
SMART:SM00292	SUPFAM:SSF100879	SUPFAM:SSF52113	SUPFAM:SSF56672	UniParc:UPI0008453F96	InterPro:UmuC
EnsemblPlantsGene:Zm00001d014568	EnsemblPlants:Zm00001d014568_P023	EnsemblPlants:Zm00001d014568_T023	SEG:seg	:	:

Description

DNA repair protein REV1

Coordinates

chr5:+:53682626..53719980

Molecular Weight (calculated)

124232.0 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.522

Length

1129 amino acids

Sequence
(BLAST)

0001: MSSTSSGRRA PSSSAAVASS PGQKRARDEA SSGSPSDPDA AKNPRRAFAS SPFADFGTYM AAKNSKLAAQ FDADANTSGT DAGGLFDGVS IFVDGFTVPS
0101: SQELKEIMLN NGGRFVNYFS RHTVTHIVCS NLPDSKMKNL RAFSRGLPVV KPAWVVDSLA ENRLLNCIFS CPYSPINQNS SSSRKQMKLS SFFSEKQNEI
0201: CHKGEQNNQN KDIEFQPSSA QEGSQYQSGD CESEASMDTL ELSKDSLSSD EQKASAFEER ESGDFTVDEG EYDYETACSE SRNDTDGNLG VPQSPNAKSR
0301: CSNLFSTRST GSHLSLSLEK SAAKPSGRPH STLTDPNFVE NYFKYSRLHF IGTWRNRYRK RFSNLLEAKG IKLSADHSGK KKTIIHIDMD CFFVSVVIRN
0401: MPELHDKPVA VCHSDNPKGT AEISSANYPA RNYGIKAGMF VRDAKARCPH LMIVPYNFDA YEEVADQFYG TLHKHCSKVQ ALSCDEAFLD MTECLHDNPE
0501: EVTQRIRSEI FHATKCTASA GIAENMLLAR LATRSAKPNG QCFIPSEKAD DYLSSLSIKA LPGIGHTVSS KLKSKEIEYC SQLRNVSKDA LHKDFGKKTG
0601: DLLWNYCRGI DHSIVGSVQE TKSVGAEINW GVRFNDNKDA EHFLNNLCKE VSLRLQGCGV QGRTITLKVK TRREGAGEPI KYMGCGDCET TSRSMTIAGA
0701: TDSFVTLQRI AKQLFSALHL DVKEVRGIGL SLSKLEHADL GRGASQGHML ESWLASPAAK LKKQQSEILG NVNVAGTSGL KDLRSGPSHT AEANLRNDRS
0801: TVFHNVELPP LSQLDLEVLK NLPPEIMSEM NEMYKGELQS LVDTLNSDKG KENSSKSLAL PAVIRKSVPA DAKLQGYRDH RDSMHLEEEH TKGKSDKQLS
0901: EAKPANNASC SRVSASIEKT TKSVTQLDLM PDSLSQADLT VLQELPEDVK ADLFSALPLH RSGDPACSTS NVSESKSPNV VRAENRSSND GGTDDLKTPR
1001: SFLPPGSSQK WIEQFRVSSC LILNVIAEQH TDSSCQRPLS SVLEPVASFL PLCPNPGSEE WNETHSCLSE LLRHYIQLKV EYDIEELYKC FCLLKRFSSA
1101: SEFFLDLHDS ILPFLQDSIS QHYGGTLQF

Best Arabidopsis Sequence Match ( AT5G44750.1 )
(BLAST)

0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI
0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS
0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG
0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV
0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE
0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG
0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VQHFLQCLCK EVSLRLQGCE MIGRTFTLKI KKRKKDAEEP TKYMGCGDCD NLSRSITVPA ATDDIEVLQR
0701: ISKKLFGSFC LDVKEVRGVG LQVSKLDSAD PSNKGSRTLK SWLSSAPAVV QIEQDDNVFA AKVRENSDCN RPVTGGVSRL RESNSEESSI QSGDTNSSLP
0801: PMCYLDMEVL ENLPPELLSE LDGTYGGKLF ELIEKKRGKR RINCNSPHVS LDGTAASIKE LKSLSVKIHG LSTSGEKEYK EPYVPHPSIA RTSNQHTIEM
0901: TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF
1001: KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI
1101: P

Arabidopsis Description

REV1DNA repair protein REV1 [Source:UniProtKB/Swiss-Prot;Acc:A3EWL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.