CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39397	Canola	plastid	93.38	93.38
AT5G44750.2	Thale cress	plastid	84.96	81.27
KRH77949	Soybean	plastid	51.47	48.79
Solyc01g107510.2.1	Tomato	nucleus	46.74	47.27
VIT_03s0091g00200.t01	Wine grape	plastid	52.03	46.81
GSMUA_Achr10P...	Banana	nucleus, plastid	18.83	44.03
Os06t0691000-01	Rice	plastid	44.28	41.6
Zm00001d014568_P023	Maize	plastid	44.09	41.28
KXG20701	Sorghum	plastid	43.9	41.21
TraesCS7A01G436200.3	Wheat	plastid	43.42	39.16
TraesCS7B01G335900.1	Wheat	plastid	43.33	39.11
TraesCS7D01G426800.1	Wheat	plastid	43.24	38.89
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	42.76	38.53
GSMUA_Achr10P...	Banana	nucleus	23.27	34.79
CDY28119	Canola	nucleus	12.2	19.55
CDY50970	Canola	nucleus	11.83	19.11
CDY39396	Canola	nucleus	10.69	16.77
CDY60652	Canola	nucleus	10.41	16.34

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.5	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	Gene3D:3.40.50.10190	GO:A0A078JA10	UniProt:A0A078JA10	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
EnsemblPlants:CDY60654	ProteinID:CDY60654	ProteinID:CDY60654.1	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0042276	GO:GO:0071897	EnsemblPlantsGene:GSBRNA2T00029892001	InterPro:IPR001126
InterPro:IPR001357	InterPro:IPR036420	InterPro:IPR036775	InterPro:LIG3_BRCT	PFAM:PF00817	PFAM:PF11799
PFAM:PF16759	PIRSF:PIRSF036573	PFscan:PS50172	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF12
InterPro:REV1	SMART:SM00292	SUPFAM:SSF100879	SUPFAM:SSF52113	SUPFAM:SSF56672	UniParc:UPI0004EE3428
InterPro:UmuC	SEG:seg	:	:	:	:

Description

BnaCnng36770DDNA repair protein REV1 [Source:UniProtKB/TrEMBL;Acc:A0A078JA10]

Coordinates

chrLK033902:+:19726..25992

Molecular Weight (calculated)

117544.0 Da

IEP (calculated)

6.650

GRAVY (calculated)

-0.490

Length

1057 amino acids

Sequence
(BLAST)

0001: MKRSIGSNSS GNSGSSKKSK KSNQKTLGAA WGAASRPPSS SSRSSPFSDF GSYMEVKNRK LQKQFETEAS SGVSGSEKLI FQGVSIFVDG FTIPSHQELR
0101: GYMLRYGGRF ENYFSRRSVT HIVCSNLPDS KVKNLRAFSR GLPVVKPSWI VDSISSNRLL GWVPYQLDQL NDTQPKLSAF FAPRRLSNPP VTSSQPETGY
0201: SEAEDGSSII AGDSEESRDH VADEIDGVYT EKTTPEMTAQ TITHDLKSSE VNADILGSYD NDEKELSSEL QSTTNLPSAS DNKSSHGKPV APAGGSSVRR
0301: HSTLEDPNFV ENYFKNSRLH FIGTWRNRYR KRFHGSFNGL KWADSGQNTA ENAKKLTIIH IDLDSFFVSV VIRNRLELQD KPVAVCHSDN PKGTAEISSA
0401: NYPARAYGVK AGMFVRHAKD LCPQLVIVPY NFQAYEEVAD QFYDILHRHC RKVQAVSCDE AFLDVSDLRD VEPEYTASTI RREIIETTGC SASAGIGGTM
0501: LMARLATRVA KPAGQFHISA EKVEEFLDQL AVGTLPGVGS VLKEKLEKQN IQTCRQLRLI SKDALQKDFG VKTGEMLWSY SRGLDLRSVR AVQESKSIGA
0601: EVNWGVRFRD QQDVQHFLQC LCKEVSLRLQ GCEMIGRTFT LKVKRRKKDA EEPAKYMGCG DCDNFSRSIT VPAATDDVEV LQRISKKLFG SFCLDVKEVR
0701: GVGLQVSKLE GPDPSNKGSS KTLTSWLNSA PAYVQTEKDD NVFAAEVREI PADCKRRDTG GVSSLRECNS AEPSVQSDDT NSSLPPMCHL DMEVLENLPP
0801: ELLLELDGTY GGKLFELIEK KRGKRKINSD SSHVSLDEPH VAHPPIAREP KERGIEMNDL VPLSLSQVDV SVLQELPEEL RADVLGAFHA HRRQQSSSDA
0901: PMETGKKQDK ETTYINDAEN EIGFSSSSLW FGNPPLWVEN FKVSGNSTLE KMSEIYYKVA QSRPMLSTVL QRAISEVGSF HDESASDLEK TVYDVCEFLK
1001: EYVKIKVEGD IEEIYLCFRL LRRLAARSQL FHQVCEIVSP FIQALISEHY GGSLSIP

Best Arabidopsis Sequence Match ( AT5G44750.1 )
(BLAST)

0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI
0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS
0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG
0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV
0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE
0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG
0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VQHFLQCLCK EVSLRLQGCE MIGRTFTLKI KKRKKDAEEP TKYMGCGDCD NLSRSITVPA ATDDIEVLQR
0701: ISKKLFGSFC LDVKEVRGVG LQVSKLDSAD PSNKGSRTLK SWLSSAPAVV QIEQDDNVFA AKVRENSDCN RPVTGGVSRL RESNSEESSI QSGDTNSSLP
0801: PMCYLDMEVL ENLPPELLSE LDGTYGGKLF ELIEKKRGKR RINCNSPHVS LDGTAASIKE LKSLSVKIHG LSTSGEKEYK EPYVPHPSIA RTSNQHTIEM
0901: TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF
1001: KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI
1101: P

Arabidopsis Description

REV1DNA repair protein REV1 [Source:UniProtKB/Swiss-Prot;Acc:A3EWL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.