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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d014568_P023 Maize plastid 92.54 92.29
Os06t0691000-01 Rice plastid 73.27 73.33
TraesCS7B01G335900.1 Wheat plastid 71.4 68.66
TraesCS7A01G436200.3 Wheat plastid 71.4 68.6
TraesCS7D01G426800.1 Wheat plastid 71.05 68.09
HORVU7Hr1G099700.8 Barley cytosol, mitochondrion, nucleus, plastid 67.23 64.54
GSMUA_Achr10P... Banana nucleus, plastid 18.92 47.12
CDY39397 Canola plastid 41.39 44.09
CDY60654 Canola plastid 41.21 43.9
Solyc01g107510.2.1 Tomato nucleus 40.14 43.25
KRH77949 Soybean plastid 42.72 43.14
VIT_03s0091g00200.t01 Wine grape plastid 44.49 42.64
AT5G44750.2 Thale cress plastid 41.65 42.44
Bra025106.1-P Field mustard plastid 40.94 41.76
GSMUA_Achr10P... Banana nucleus 24.69 39.32
EES01500 Sorghum nucleus 10.75 19.03
KXG38024 Sorghum nucleus 10.39 18.51
Protein Annotations
KEGG:00230+2.7.7.7KEGG:00240+2.7.7.7Gene3D:1.10.150.20MapMan:14.2.5Gene3D:2.30.40.20Gene3D:3.30.1490.100
Gene3D:3.30.70.270Gene3D:3.40.50.10190UniProt:A0A194YM72InterPro:BRCT_domInterPro:BRCT_dom_sfInterPro:DNA_pol_Y-fam_lit_finger_sf
InterPro:DNA_pol_Y-fam_little_fingerGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003684GO:GO:0003824
GO:GO:0003887GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006950GO:GO:0006974GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009628GO:GO:0009987GO:GO:0010224GO:GO:0016740
GO:GO:0016779GO:GO:0042276GO:GO:0071897InterPro:IPR001126InterPro:IPR001357InterPro:IPR036420
InterPro:IPR036775EnsemblPlants:KXG20701ProteinID:KXG20701ProteinID:KXG20701.1PFAM:PF00817PFAM:PF11799
PFAM:PF16589PIRSF:PIRSF036573PFscan:PS50172PFscan:PS50173PANTHER:PTHR11076PANTHER:PTHR11076:SF12
InterPro:REV1SMART:SM00292EnsemblPlantsGene:SORBI_3010G240800SUPFAM:SSF100879SUPFAM:SSF52113SUPFAM:SSF56672
UniParc:UPI0007F212ABInterPro:UmuCSEG:seg:::
Description
hypothetical protein
Coordinates
chr10:-:58247904..58258128
Molecular Weight (calculated)
123470.0 Da
IEP (calculated)
6.485
GRAVY (calculated)
-0.520
Length
1126 amino acids
Sequence
(BLAST)
0001: MSSTSSARRA PSSSAAAASS PGQKRARDEA SSGSPSDPDP AKNPRRAFAS SPFADFGSYM AAKNSKLAAQ FDADASISGA AAGCLFAGVS IFVDGFTVPS
0101: SQELKEIMLN NGGRFVNYFS RHTVTHIVCS NLPDSKMKNL RAFSKGLPVV KPAWVVDSLA ENRLLNCAPY QINQNSSSSR KQMKLSSFFS EKQNEMHHKG
0201: GQNNKNKDIE FQSSSAQEGS QYQSGDCESE ASMDNVELSK DSLSSDEQKA SASEERESRD FTVDEGEYDC ETACSESRND TDDNLGVPQS PDAKSRCSNL
0301: CSTSSTGSHV SLPLEKSAAK PSGRPHSTLT DPNFVENYFK YSRLHFIGTW RNRYRKRFSN LLEAKVIKSS ADHSGKKKTI IHIDMDCFFV SVVIRNMPEL
0401: HDKPVAVCHS DNPKGTAEIS SANYPARNYG IKAGMFVRDA KARCPHLMIV PYNFDAYEEV ADQFYGTLHK HCSKVQALSC DEAFLDMTEC LHDNPEEVTQ
0501: RIRSEIFHAT KCTASAGIAE NMLLARLATR SAKPNGQCFI PSEKADDYLS SLSIKALPGI GHTVSSKLKS KEIEYCGQLR NVPKDALHKD FGKKTGDLLW
0601: NYCRGIDHSV VGSVQETKSV GAEINWGVRF NDNKDAEHFL TNLCKEVSLR LQGCGVQGRT VTLKVKTRRE GAGEPIKYMG CGDCETTSRS MTIAGATDSF
0701: ITLQRIAKQL FSALRLDVKE VRGIGLSLSK LEHADLGRGA PQGNMLESWL ASPAVKLKKH HSEMQGNVDV AGTSRLQDLR RSGPSHTAEV NVRSDRSTVV
0801: HNIELPPLSQ LDLEVLKNLP PEIISEMNEM YKGELQGLVD TLNSDKGKGN SSKSLALPAV TCDSVPGDAK LHGYRDHEDS MHSEEEHTKG KSEEQLSESK
0901: AANNASCSRA SALAEKTTKS VTQLDLMPDS LSQADLTVLQ ELPEDVKADL FSALPLHRSG DPACSTSNVS ESKSLNVVRA ENRSPIDGGA DDPENPRTFL
1001: PPGSSQKWIE QFRVSSCLIL NVIAEQHTDS SCQRPLSSVL EPVASFLPLC PNSGSEEWNE THACLSELLR HYIQLKVEDD IEELYKCFCL LKRFSSASEF
1101: FLELHDSILP FLQDSVSQHY GGTLQF
Best Arabidopsis Sequence Match ( AT5G44750.1 )
(BLAST)
0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI
0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS
0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG
0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV
0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE
0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG
0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VQHFLQCLCK EVSLRLQGCE MIGRTFTLKI KKRKKDAEEP TKYMGCGDCD NLSRSITVPA ATDDIEVLQR
0701: ISKKLFGSFC LDVKEVRGVG LQVSKLDSAD PSNKGSRTLK SWLSSAPAVV QIEQDDNVFA AKVRENSDCN RPVTGGVSRL RESNSEESSI QSGDTNSSLP
0801: PMCYLDMEVL ENLPPELLSE LDGTYGGKLF ELIEKKRGKR RINCNSPHVS LDGTAASIKE LKSLSVKIHG LSTSGEKEYK EPYVPHPSIA RTSNQHTIEM
0901: TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF
1001: KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI
1101: P
Arabidopsis Description
REV1DNA repair protein REV1 [Source:UniProtKB/Swiss-Prot;Acc:A3EWL3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.