CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013729_P003	Maize	nucleus	85.28	79.5
Os03t0616300-01	Rice	nucleus	71.36	73.1
TraesCS4A01G234800.1	Wheat	nucleus	75.47	72.94
HORVU4Hr1G013680.2	Barley	nucleus	75.16	72.52
TraesCS4B01G080200.1	Wheat	nucleus	74.05	71.45
GSMUA_Achr5P01740_001	Banana	nucleus	59.02	57.74
AT1G49980.1	Thale cress	nucleus	56.49	53.2
Solyc01g107010.2.1	Tomato	nucleus	57.44	52.76
CDY50970	Canola	nucleus	54.43	52.6
KRH27580	Soybean	nucleus	56.33	52.51
PGSC0003DMT400066146	Potato	nucleus	56.96	52.33
CDY28119	Canola	nucleus	53.96	51.67
Bra018821.1-P	Field mustard	nucleus	54.27	50.44
KRH77930	Soybean	cytosol	49.53	49.84
VIT_03s0091g00860.t01	Wine grape	nucleus	55.22	49.57
EES01500	Sorghum	nucleus	16.3	16.2
KXG20701	Sorghum	plastid	18.51	10.39

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	UniProt:A0A1B6QJD4	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003697	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775	EnsemblPlants:KXG38024	ProteinID:KXG38024
ProteinID:KXG38024.1	HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	EnsemblPlantsGene:SORBI_3001G167200	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI00081AC615
InterPro:UmuC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:13918525..13924178

Molecular Weight (calculated)

70157.4 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.444

Length

632 amino acids

Sequence
(BLAST)

001: MSAAAGTPPE GGGDRPWQSY HTAYTNAKAG MEGVDKEKVQ KVIYEMSKGS KYFENEQRKE AVTKQKIEHL RAQCAALTDN DISHFQKVAE KKMLELEASR
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPGLVFV RPNFERYTHY SELTRKVFQR YDPNFIATSL
201: DEAYLNITNV CIERGITGEE VATELRSAIY QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDREAV LTFVSTLPIR KIGGIGKVTE QMLRQVLGIS
301: TCQEMLQKAA FLCALFSEGS ADFFLSVGLG LGGTETPEQR QRKSISCERT FAATNDSSLL FEKLDSLAEN LTDDLQKEGL KGKTLTLKLK TADFEVRTRA
401: VTTRNYINSK EDILVYATKL LKAEMPLSLR LMGLRMSQLH DEKDDPSTST QKTLDIFFRS SNGVSTDQQD FFLHDESCFI PEQRSFGNHS NEAVISKPLG
501: GTKLDDVSSS AKVAPAEKLN EPDNLISPKA VASSSKPDQQ SWIDGYICSI CGFELPPGFE EERLEHSDFH LAETLQQEEA VDGTRHISNE SRLADRERPC
601: STTPTPKKKL KSSKEGKHIP IDAFFTKCNK NL

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.