Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28119 | Canola | nucleus | 83.61 | 85.0 |
| CDY50970 | Canola | nucleus | 82.41 | 84.56 |
| Bra018821.1-P | Field mustard | nucleus | 81.82 | 80.74 |
| Solyc01g107010.2.1 | Tomato | nucleus | 59.61 | 58.14 |
| PGSC0003DMT400066146 | Potato | nucleus | 59.02 | 57.56 |
| KRH27580 | Soybean | nucleus | 57.68 | 57.08 |
| VIT_03s0091g00860.t01 | Wine grape | nucleus | 59.46 | 56.68 |
| KXG38024 | Sorghum | nucleus | 53.2 | 56.49 |
| KRH77930 | Soybean | cytosol | 51.71 | 55.25 |
| TraesCS4A01G234800.1 | Wheat | nucleus | 52.01 | 53.36 |
| GSMUA_Achr5P01740_001 | Banana | nucleus | 51.27 | 53.25 |
| HORVU4Hr1G013680.2 | Barley | nucleus | 51.86 | 53.13 |
| Zm00001d013729_P003 | Maize | nucleus | 53.2 | 52.65 |
| TraesCS4B01G080200.1 | Wheat | nucleus | 51.27 | 52.52 |
| Os03t0616300-01 | Rice | nucleus | 47.24 | 51.38 |
| AT5G44740.2 | Thale cress | nucleus | 18.48 | 18.45 |
| AT5G44750.2 | Thale cress | plastid | 18.03 | 10.95 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.810 | MapMan:14.2.3 | Gene3D:2.30.40.20 | Gene3D:3.30.1490.100 |
| Gene3D:3.30.70.270 | EntrezGene:841422 | ProteinID:AAF76444.1 | ProteinID:AEE32503.1 | EMBL:AK221284 | ProteinID:ANM58190.1 |
| ProteinID:ANM58192.1 | ProteinID:ANM58193.1 | ProteinID:ANM58196.1 | ProteinID:ANM58197.1 | ArrayExpress:AT1G49980 | EnsemblPlantsGene:AT1G49980 |
| RefSeq:AT1G49980 | TAIR:AT1G49980 | RefSeq:AT1G49980-TAIR-G | EnsemblPlants:AT1G49980.1 | TAIR:AT1G49980.1 | EMBL:AY508701 |
| Unigene:At.43723 | InterPro:DNA_pol_Y-fam_lit_finger_sf | InterPro:DNA_pol_Y-fam_little_finger | InterPro:DNA_pol_eta/kappa/iota/IV | InterPro:DNApol_IV | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003697 | GO:GO:0003824 | GO:GO:0003887 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0016779 |
| GO:GO:0046872 | GO:GO:0071897 | InterPro:IPR001126 | InterPro:IPR036775 | HAMAP:MF_01113 | RefSeq:NP_001320644.1 |
| RefSeq:NP_001320646.1 | RefSeq:NP_001320647.1 | RefSeq:NP_001320650.1 | RefSeq:NP_001320651.1 | RefSeq:NP_175420.3 | PFAM:PF00817 |
| PFAM:PF11799 | PIRSF:PIRSF036603 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50173 | PANTHER:PTHR11076 | PANTHER:PTHR11076:SF33 | UniProt:Q6JDV7 |
| SUPFAM:SSF100879 | SUPFAM:SSF56672 | UniParc:UPI00003778AF | InterPro:UmuC | SEG:seg | : |
Description
POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
Coordinates
chr1:+:18507922..18513340
Molecular Weight (calculated)
75256.1 Da
IEP (calculated)
7.512
GRAVY (calculated)
-0.570
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.