Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G013680.2 | Barley | nucleus | 93.12 | 92.98 |
| TraesCS4B01G080200.1 | Wheat | nucleus | 91.74 | 91.6 |
| KXG38024 | Sorghum | nucleus | 72.94 | 75.47 |
| Os03t0616300-01 | Rice | nucleus | 68.35 | 72.45 |
| Zm00001d013729_P003 | Maize | nucleus | 72.02 | 69.47 |
| GSMUA_Achr5P01740_001 | Banana | nucleus | 56.42 | 57.12 |
| PGSC0003DMT400066146 | Potato | nucleus | 57.03 | 54.22 |
| Solyc01g107010.2.1 | Tomato | nucleus | 56.88 | 54.07 |
| KRH27580 | Soybean | nucleus | 54.74 | 52.8 |
| CDY50970 | Canola | nucleus | 52.75 | 52.75 |
| CDY28119 | Canola | nucleus | 52.6 | 52.12 |
| AT1G49980.1 | Thale cress | nucleus | 53.36 | 52.01 |
| Bra018821.1-P | Field mustard | nucleus | 52.75 | 50.74 |
| VIT_03s0091g00860.t01 | Wine grape | nucleus | 54.59 | 50.71 |
| KRH77930 | Soybean | cytosol | 48.01 | 50.0 |
| TraesCS3A01G294700.3 | Wheat | nucleus | 15.6 | 16.27 |
| TraesCS7A01G436200.3 | Wheat | plastid | 19.27 | 10.75 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.810 | MapMan:14.2.3 | Gene3D:2.30.40.20 | Gene3D:3.30.1490.100 |
| Gene3D:3.30.70.270 | ncoils:Coil | InterPro:DNA_pol_Y-fam_lit_finger_sf | InterPro:DNA_pol_Y-fam_little_finger | InterPro:DNA_pol_eta/kappa/iota/IV | InterPro:DNApol_IV |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003697 | GO:GO:0003824 |
| GO:GO:0003887 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 |
| InterPro:IPR001126 | InterPro:IPR036775 | PFAM:PF00817 | PFAM:PF11799 | PIRSF:PIRSF036603 | PFscan:PS50173 |
| PANTHER:PTHR11076 | PANTHER:PTHR11076:SF33 | SUPFAM:SSF100879 | SUPFAM:SSF56672 | EnsemblPlantsGene:TraesCS4A01G234800 | EnsemblPlants:TraesCS4A01G234800.1 |
| InterPro:UmuC | TIGR:cd03586 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:-:543740661..543746036
Molecular Weight (calculated)
72414.4 Da
IEP (calculated)
6.115
GRAVY (calculated)
-0.506
Length
654 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAAGTPSD GGGDRPWQSY HTAYTNAKAG MEGVDKEKVQ KVIYEMSKGS KYFENEQKKE TITKLKIEHL RAQCAKLTDN DISHFQKVAE KKILELEASR
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPDLVFV RPNFERYSHY SGLARKVFQR YDPNFFATSL
201: DEAYLDITEV CIERGITGEE VASELRDAVH QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDRDAV TTFVSTLPIR KIGGIGKVTE QMLHQVLSIS
301: TCQEMLQKAA FLCALFSEGS TDFFLSVGLG LGGTETPEHR LRKSMSCERT FSGTNDSRLL FEKLDNLAEN LADDMQKECL KGRTLTLKLK TAAFEVRTRA
401: ATAQNYMSSK EDILIYAKKL LKAEMPLSLR LMGLRMSHFS GEKDDSTSPT QKTLDRFFQS SDINSNTNGT NGASCIDVSG GHNDCNDAAT KDESIHDAEK
501: DVSIDQQSSH DDNSSVPEGA SSVNYDNEAA SSSWKVTQTE KFDELGDLTS SRACASSSKP GQHFWVDGYI CSLCGFELPP CFEEERQEHS DFHLAEMLQQ
601: EEAVDNTARL SKERLAERPC STTTTPTPKK KLKSSKEGKH IPIDSFFLKC NKKL
101: DLSKIWLHTD MDAFYAAVET LENPSLKGKP LAVGSMSMIA TASYEARKFG VRAAMPGFIG CKLCPDLVFV RPNFERYSHY SGLARKVFQR YDPNFFATSL
201: DEAYLDITEV CIERGITGEE VASELRDAVH QETGLTCSAG VAPNRMIAKV CSDINKPNGQ FILPNDRDAV TTFVSTLPIR KIGGIGKVTE QMLHQVLSIS
301: TCQEMLQKAA FLCALFSEGS TDFFLSVGLG LGGTETPEHR LRKSMSCERT FSGTNDSRLL FEKLDNLAEN LADDMQKECL KGRTLTLKLK TAAFEVRTRA
401: ATAQNYMSSK EDILIYAKKL LKAEMPLSLR LMGLRMSHFS GEKDDSTSPT QKTLDRFFQS SDINSNTNGT NGASCIDVSG GHNDCNDAAT KDESIHDAEK
501: DVSIDQQSSH DDNSSVPEGA SSVNYDNEAA SSSWKVTQTE KFDELGDLTS SRACASSSKP GQHFWVDGYI CSLCGFELPP CFEEERQEHS DFHLAEMLQQ
601: EEAVDNTARL SKERLAERPC STTTTPTPKK KLKSSKEGKH IPIDSFFLKC NKKL
001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNS
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNS
Arabidopsis Description
POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.