CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77930	Soybean	cytosol	77.14	83.28
VIT_03s0091g00860.t01	Wine grape	nucleus	63.57	61.22
CDY50970	Canola	nucleus	57.23	59.33
CDY28119	Canola	nucleus	57.52	59.09
PGSC0003DMT400066146	Potato	nucleus	59.88	59.01
Solyc01g107010.2.1	Tomato	nucleus	59.14	58.28
AT1G49980.1	Thale cress	nucleus	57.08	57.68
Bra018821.1-P	Field mustard	nucleus	56.93	56.76
KXG38024	Sorghum	nucleus	52.51	56.33
GSMUA_Achr5P01740_001	Banana	nucleus	52.36	54.95
TraesCS4A01G234800.1	Wheat	nucleus	52.8	54.74
HORVU4Hr1G013680.2	Barley	nucleus	52.65	54.5
TraesCS4B01G080200.1	Wheat	nucleus	52.36	54.2
Zm00001d013729_P003	Maize	nucleus	53.39	53.39
Os03t0616300-01	Rice	nucleus	47.05	51.7
KRH42423	Soybean	nucleus	18.14	17.5
KRH77949	Soybean	plastid	19.17	11.66

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	EntrezGene:100816973	MapMan:14.2.3	Gene3D:2.30.40.20
Gene3D:3.30.1490.100	Gene3D:3.30.70.270	EMBL:ACUP02006727	ncoils:Coil	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	EnsemblPlantsGene:GLYMA_11G001900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0071897	UniProt:I1LFP9	InterPro:IPR001126	InterPro:IPR036775	EnsemblPlants:KRH27580
ProteinID:KRH27580	ProteinID:KRH27580.1	HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI0002953FFE
InterPro:UmuC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:96310..100651

Molecular Weight (calculated)

75974.2 Da

IEP (calculated)

7.038

GRAVY (calculated)

-0.472

Length

678 amino acids

Sequence
(BLAST)

001: MIVKGARVLD GSANAMMKGK GTEDDRPWQS YHTVYTTAKA GMELVDKEKV QRVVYEMSKG SKYFQNEERK EAFIKQKIDN LRIQCANLTQ EDLAHYQKVA
101: DRRIVELEAS RDLSRIWLHV DMDAFYAAVE TLSNPTLKGK PMAVGSMSML STANYEARKF GVRAAMPGFI ARKLCPELIF VPTDFKKYTY YSDLTRKVFG
201: RYDPNFIAGS LDEAYLDITE VCRERNVKSE EIAQELRAGV YEETGLTCSA GVAPNRLLAK VCSDINKPNG QYVLPNDRMA VMTFVSSLPI RKIGGIGKVT
301: EHILKGVFGI NTCEQMLEKS SYICAFFSQS TADFFCSVGL GLGQTDSPQV RFRKSISSER TFSATKDEVL LHKKLEELAE MLSADMQKEG LSGRTLTLKL
401: KTASFEVRTR AVTLQKYISS SEDILKHAKK LLQAELPISV RLIGLRVSQF NGDKCSAKSD PTQKTITNFI TSGDVNRNCS SFPDVADHDF VSNAETDMSI
501: DSRQTGQLDW RDPFDGNYLS DVDYQSCTVQ KSDGVEEVQT SSNDATSSHY SGLTEVLGST SYLGQVEGIN VKNGSNLLED ERLDSCCQEK TMLWLNDYKC
601: SLCGIELPPS FVEERLEHSD FHLAEKLQKE ESSIHQKSVP SQSKGQKDGV TRQSKSKKQK LSQKEGSYTP IDYFFVKK

Best Arabidopsis Sequence Match ( AT1G49980.8 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNS

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.