CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	25.18	70.8
Zm00001d019198_P001	Maize	cytosol	25.18	70.8
Zm00001d002308_P001	Maize	cytosol	24.61	69.48
PGSC0003DMT400002635	Potato	cytosol	31.15	67.18
Zm00001d053264_P001	Maize	cytosol	33.14	66.76
Zm00001d037012_P001	Maize	cytosol	18.35	59.72
CDY60652	Canola	nucleus	53.91	56.31
CDY39396	Canola	nucleus	53.63	55.93
Bra025107.1-P	Field mustard	nucleus	54.77	55.72
EES01500	Sorghum	nucleus	49.93	55.19
Os01t0757800-01	Rice	cytosol	49.93	54.67
AT5G44740.2	Thale cress	nucleus	52.2	54.61
GSMUA_Achr10P...	Banana	cytosol	50.92	54.49
TraesCS3A01G294700.3	Wheat	nucleus	48.36	54.23
TraesCS3D01G294800.3	Wheat	nucleus	48.22	53.9
Solyc01g034150.2.1	Tomato	nucleus	54.48	53.72
TraesCS3B01G329300.8	Wheat	nucleus	48.36	52.71
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	48.22	52.15
Zm00001d043404_P001	Maize	nucleus	49.93	51.92
VIT_01s0011g01180.t01	Wine grape	nucleus	56.76	51.62
Zm00001d023711_P001	Maize	nucleus	13.8	42.54
PGSC0003DMT400002636	Potato	extracellular	23.61	41.5
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	27.03	38.0
Zm00001d044720_P002	Maize	nucleus	23.61	31.2
Zm00001d051953_P002	Maize	nucleus	24.75	30.96
Zm00001d014511_P002	Maize	nucleus	24.75	30.37
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	24.04	29.81
KRH27580	Soybean	nucleus	17.5	18.14
KRH77930	Soybean	cytosol	15.93	17.83
KRH77949	Soybean	plastid	17.64	11.12

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	EntrezGene:100780894	MapMan:14.2.1	Gene3D:2.30.40.20
Gene3D:3.30.1490.100	Gene3D:3.30.70.270	EMBL:ACUP02004803	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV
EnsemblPlantsGene:GLYMA_08G088900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:I1KRK8	InterPro:IPR001126	InterPro:IPR036775	EnsemblPlants:KRH42423	ProteinID:KRH42423
ProteinID:KRH42423.1	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI00023392B7	InterPro:UmuC	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:6714963..6721092

Molecular Weight (calculated)

77602.7 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.531

Length

703 amino acids

Sequence
(BLAST)

001: MPVARRETCD GRVIAHVDMD CFYVQVEQRK QPNLRGLPSA VIQYNSYKGG ALIAVSYEAR RCGVKRSMRG DEAKEACPQI QLVQVPVARG KADLNSYRNA
101: GSEVVSVLSQ KGRCERASID EVYLDLTHAA ETMLMETPLD SMQDFEDEVL KSHVLGLEIK DGSDAKDEVR KWLCRSDASY QDKLLACGAL IVCDLRMKVL
201: KETEFTCSAG IAHNKMLAKL ASAMNKPAQQ TVVPQSSVEG LLASLPIKKM KHLGGKLGSS LQSDLGVNTV GDLLQFSEEK LQQWYGINTG TWLWNIARGI
301: SGEEVEGRLL PKSHGSGKTF PGPQALKTVD SVQHWLNQLC EELNERLHSD LDQNKRIAQT LTLHARAYKT GDSDSHRKFP SKSCPLRYGT RKIQEDALIL
401: FQAGLRDFLG FYNCKAHGNE NNNWGVTSLS VSASKLVSIP SGTHSIVKYF GGSFPSSSTS NQSLDVVIDE AAPSSPSGSG NCSGLVPNEF ELEYPEDTGM
501: KDSKACLDQQ DPLCHLSCKA DGLTEESSLV SPSGSEDRIL HNEPHRDLPA TDLRRVSNIS SLKAVGKKKT AGKKLQGNCS IVHFFNNYHN SQSSLEQKNV
601: KISSSLGSHS ADNSHSTCIQ VEMPAEHPHE EFDTNKSRCS VGNMPQGRQD WSYNINEIDP SIINELPPEI QQEFQIWLRP HKRPNVAKRG SSITHYFSPD
701: KSR

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.