Factsheet for GSMUA_Achr10P09100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	29.22	76.8
Zm00001d019198_P001	Maize	cytosol	29.22	76.8
Zm00001d002308_P001	Maize	cytosol	28.61	75.5
Zm00001d053264_P001	Maize	cytosol	37.9	71.35
PGSC0003DMT400002635	Potato	cytosol	34.4	69.33
Zm00001d037012_P001	Maize	cytosol	21.46	65.28
TraesCS3A01G294700.3	Wheat	nucleus	55.86	58.53
EES01500	Sorghum	nucleus	56.47	58.33
TraesCS3D01G294800.3	Wheat	nucleus	54.95	57.39
TraesCS3B01G329300.8	Wheat	nucleus	55.86	56.9
Os01t0757800-01	Rice	cytosol	55.56	56.85
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	55.71	56.31
Zm00001d043404_P001	Maize	nucleus	55.56	53.99
AT5G44740.2	Thale cress	nucleus	53.73	52.53
CDY39396	Canola	nucleus	52.36	51.04
CDY60652	Canola	nucleus	52.21	50.97
KRH42423	Soybean	nucleus	54.49	50.92
Bra025107.1-P	Field mustard	nucleus	52.82	50.22
Solyc01g034150.2.1	Tomato	nucleus	54.19	49.93
VIT_01s0011g01180.t01	Wine grape	nucleus	56.62	48.12
Zm00001d023711_P001	Maize	nucleus	15.68	45.18
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	31.2	41.0
Zm00001d044720_P002	Maize	nucleus	26.64	32.89
Zm00001d051953_P002	Maize	nucleus	27.85	32.56
PGSC0003DMT400002636	Potato	extracellular	19.79	32.5
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	27.7	32.1
Zm00001d014511_P002	Maize	nucleus	27.85	31.94
GSMUA_Achr5P01740_001	Banana	nucleus	15.98	16.25
GSMUA_Achr10P...	Banana	nucleus	12.79	11.88
GSMUA_Achr1P18160_001	Banana	nucleus	7.91	10.79
GSMUA_Achr10P...	Banana	nucleus, plastid	5.63	8.19

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0042276
EnsemblPlantsGene:GSMUA_Achr10G09100_001	EnsemblPlants:GSMUA_Achr10P09100_001	EnsemblPlants:GSMUA_Achr10T09100_001	InterPro:IPR001126	InterPro:IPR036775	UniProt:M0RGN6
PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11
SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI000294A9DC	InterPro:UmuC	SEG:seg	:

Description

DNA-directed polymerase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G09100_001]

Coordinates

chr10:+:19085238..19097979

Molecular Weight (calculated)

73233.1 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.483

Length

657 amino acids

Sequence
(BLAST)

001: MPIARPEPQN ARVIAHVDMD CFYVQVEQRK NPDLRGLPTA VVQYNSWKGG GLIAVGYEAR KFGVKRSMRG DEAKRICPNI QLIQVPVARG KADLNLYRNA
101: GSEVVSILAT KGRCERASID EVYLDLTDAA EMMLSETPPE VLEEIDEEVL KSHVLGLHVE GNEREENVRE WLRRSDADHQ DKLLACGAII VAQLRMKALY
201: ETKFTCSAGI AHNKMLAKLA SAMHKPAQQT VVPSSSVKDL LASLPVKKMK QLGGKLGSSL QTDLGVNNVG DLLQFSQEKL QEHYGVNTGT WLWNISRGIS
301: GDAVVDRLLP KSHGCGKTFP GPQALKTIAS VENWVNQLCD ELSERIQSDL DQNRRIAHTL TLHARAFKEN DMEPQRKFPS KSCPLRYGTT KIQEDAVKLF
401: DSGLRDFLGS QHVGWGITSL SIAASKISDL PQGTCSILKF LQGKIPSSTS LSDAGEFHKE SLPLSSTDDV QSKGCTVMDE EVKHKELASE AASNDIDTIF
501: QAKPLKRIGS SVGKTKDVRK SSILKFFQSS NSSFHTMNKA CERSSLDQAS SSSFPECEEH SDLEQIDEQV GFSEDRIDSD GHHNQTRNGY TWGINMENID
601: PSVLDELPME IQREIREWFH PPKRANTSRK EVRERIREMI EIIQVKPQQV ITLLCDT

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.