Factsheet for Zm00001d014510_P002

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	39.51	89.6
Zm00001d019198_P001	Maize	cytosol	39.51	89.6
Zm00001d002308_P001	Maize	cytosol	38.98	88.75
Zm00001d037012_P001	Maize	cytosol	32.1	84.26
Zm00001d053264_P001	Maize	cytosol	39.33	63.9
Zm00001d014511_P002	Maize	nucleus	63.14	62.48
Zm00001d051953_P002	Maize	nucleus	56.79	57.3
Zm00001d044720_P002	Maize	nucleus	52.56	56.02
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	47.97	54.4
PGSC0003DMT400002635	Potato	cytosol	29.98	52.15
Zm00001d023711_P001	Maize	nucleus	20.63	51.32
EES01500	Sorghum	nucleus	39.15	34.91
Zm00001d043404_P001	Maize	nucleus	40.74	34.17
TraesCS3A01G294700.3	Wheat	nucleus	35.1	31.74
TraesCS3D01G294800.3	Wheat	nucleus	34.74	31.32
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	35.63	31.08
TraesCS3B01G329300.8	Wheat	nucleus	35.1	30.85
Os01t0757800-01	Rice	cytosol	34.92	30.84
GSMUA_Achr10P...	Banana	cytosol	32.1	27.7
AT5G44740.2	Thale cress	nucleus	30.86	26.04
CDY39396	Canola	nucleus	29.45	24.78
Bra025107.1-P	Field mustard	nucleus	30.16	24.75
CDY60652	Canola	nucleus	28.92	24.37
KRH42423	Soybean	nucleus	29.81	24.04
Solyc01g034150.2.1	Tomato	nucleus	29.45	23.42
VIT_01s0011g01180.t01	Wine grape	nucleus	30.51	22.38
Zm00001d013729_P003	Maize	nucleus	10.23	8.55
Zm00001d014568_P023	Maize	plastid	14.81	7.44
PGSC0003DMT400002636	Potato	extracellular	1.41	2.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.70.270
UniProt:A0A1D6GTV9	ProteinID:AQK66429.1	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	PFAM:PF00817
PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI000842E1C9
InterPro:UmuC	EnsemblPlantsGene:Zm00001d014510	EnsemblPlants:Zm00001d014510_P002	EnsemblPlants:Zm00001d014510_T002	:	:

Description

DNA polymerase eta

Coordinates

chr5:-:51049609..51058723

Molecular Weight (calculated)

62623.0 Da

IEP (calculated)

7.098

GRAVY (calculated)

-0.294

Length

567 amino acids

Sequence
(BLAST)

001: MGGGGPHSAE LSAQSRRQGA SEYSRLKHTM ELSLSKIIGL DATLGAIYVP NPIPLKYAYR MAQYFSTIDG PGIQDYSNAN DMQLALAQLF LGLVALFCMV
101: NIDWGRLLRN HGISDSEKVL IFFDDHQSEL KRLKQALKAG FRHLIFEDNY DTGTCDHYFL RHIYDPSYIR AGDPLEAGSV IRDLEAWAAA RVSVEVAGVK
201: HWPPSAARQQ PTGVPCRWAE AASDNSRAQL SILYLHALQR DLYGPSKYTR HLQATKDTLR EEGDITPPTG IRQAMEMQAE VERRICAQVL ESEGKKQAQF
301: DHLLYCSRAA EEPGAQGIAN RRGAVQWLER RRLDCRQLRG SWIWSMRGDE AKRVCPGINL VQVPVARGKA NLNLYRSAGA EVVAILASKG KCERASIDEV
401: YLDLTDAAKE MLLQAPPDSP EGIFMEAAKS NILGLPADAS EKEKNVRAWL CQSEADYQDK LLACGAIIVA QLRVRVLEET QFTCSAGIAH NKMLAKLVSG
501: MYKPAQQTVV PSSSVQDLLA SLPVKKMKQL GGKLGSSLQD DLGVETIGDL LSFTEEKLQE QYGVNTG

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.