CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	37.11	94.4
Zm00001d019198_P001	Maize	cytosol	37.11	94.4
Zm00001d002308_P001	Maize	cytosol	36.48	93.17
Zm00001d053264_P001	Maize	cytosol	47.96	87.39
Zm00001d037012_P001	Maize	cytosol	27.36	80.56
Zm00001d043404_P001	Maize	nucleus	82.23	77.37
TraesCS3A01G294700.3	Wheat	nucleus	74.84	75.92
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	75.31	73.69
TraesCS3D01G294800.3	Wheat	nucleus	72.64	73.45
Os01t0757800-01	Rice	cytosol	73.58	72.9
TraesCS3B01G329300.8	Wheat	nucleus	73.27	72.25
PGSC0003DMT400002635	Potato	cytosol	33.65	65.64
GSMUA_Achr10P...	Banana	cytosol	58.33	56.47
AT5G44740.2	Thale cress	nucleus	54.72	51.79
Zm00001d023711_P001	Maize	nucleus	18.55	51.75
Bra025107.1-P	Field mustard	nucleus	55.19	50.8
CDY39396	Canola	nucleus	53.62	50.59
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	39.31	50.0
KRH42423	Soybean	nucleus	55.19	49.93
CDY60652	Canola	nucleus	52.83	49.93
Solyc01g034150.2.1	Tomato	nucleus	55.03	49.09
VIT_01s0011g01180.t01	Wine grape	nucleus	56.13	46.18
Zm00001d051953_P002	Maize	nucleus	35.38	40.04
Zm00001d044720_P002	Maize	nucleus	33.02	39.47
Zm00001d014511_P002	Maize	nucleus	35.53	39.44
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	34.91	39.15
PGSC0003DMT400002636	Potato	extracellular	23.11	36.75
KXG38024	Sorghum	nucleus	16.2	16.3
KXG20701	Sorghum	plastid	19.03	10.75

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	EntrezGene:8075604	UniProt:C5XKS0	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV
EnsemblPlants:EES01500	ProteinID:EES01500	ProteinID:EES01500.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0042276	InterPro:IPR001126
InterPro:IPR036775	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF11	EnsemblPlantsGene:SORBI_3003G301400	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI0001A84A28	InterPro:UmuC
RefSeq:XP_002456380.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:63215425..63221732

Molecular Weight (calculated)

69789.5 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.558

Length

636 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHVDMD CFYVQVEQRR NPALRGQPTA VVQYNDWKGG GLIAVSYEAR GFGVKRSMRG DEAKSVCPGI NLVQVPVARG KADLNLYRSA
101: GSEVVAILAS KGKCERASID EVYLDLTDAA KEMLLQAPPD SQEEIFMEAA KSNILGLLSD AGEKEKNVRA WLCRSDADYQ DKLLACGAII VAQLRVRVLE
201: ETQFTCSAGI AHNKMLAKLV SGMHKPAQQT VVPSSSVQDF LASLPVKKMK QLGGKLGSSL QDDLGVETIG DLLSFTEDKL QEQYGVNTGT WLWKTARGIS
301: GEEVEDRLLP KSHGCGKTFP GPRALKNSAS VKGWLDQLCE ELSERIQSDL NQNKRIAQTL TLHARASKEN ERDSTKKFPS KSCPLRYGTR KIQEDAMKLF
401: ESGLHEFLES QNTGWSITSL SVTASKIFDI PSGTSSILRY IKGPNSAAPP AIPDSSSVPE DPSLDNDVFV KPIHEEQCQP STSEKEDNNT HSVSTISAKQ
501: CQANKEKRIS KKLPEVKGTS SILKFLSRGQ STFHEKRKSD GLICSHQGPG SSSEANKAEE NNVPADAEDR NHTNSCAEPS GSNTWMFNIQ DIDPAVVEEL
601: PPEIQREIQG WVRPSKHPST KRRGSTISSY FPPARS

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.