Factsheet for Zm00001d053264_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	69.05	96.4
Zm00001d019198_P001	Maize	cytosol	69.05	96.4
Zm00001d002308_P001	Maize	cytosol	67.91	95.18
Zm00001d037012_P001	Maize	cytosol	50.43	81.48
PGSC0003DMT400002635	Potato	cytosol	59.31	63.5
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	73.64	51.4
Zm00001d023711_P001	Maize	nucleus	33.24	50.88
EES01500	Sorghum	nucleus	87.39	47.96
Zm00001d043404_P001	Maize	nucleus	91.69	47.34
TraesCS3A01G294700.3	Wheat	nucleus	79.94	44.5
TraesCS3D01G294800.3	Wheat	nucleus	79.37	44.04
Os01t0757800-01	Rice	cytosol	79.66	43.3
TraesCS3B01G329300.8	Wheat	nucleus	79.94	43.26
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	80.23	43.08
Zm00001d051953_P002	Maize	nucleus	64.18	39.86
Zm00001d044720_P002	Maize	nucleus	60.74	39.85
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	63.9	39.33
Zm00001d014511_P002	Maize	nucleus	64.18	39.09
GSMUA_Achr10P...	Banana	cytosol	71.35	37.9
AT5G44740.2	Thale cress	nucleus	69.34	36.01
CDY39396	Canola	nucleus	67.34	34.87
Bra025107.1-P	Field mustard	nucleus	68.48	34.59
CDY60652	Canola	nucleus	66.48	34.47
KRH42423	Soybean	nucleus	66.76	33.14
Solyc01g034150.2.1	Tomato	nucleus	67.34	32.96
VIT_01s0011g01180.t01	Wine grape	nucleus	68.48	30.92
Zm00001d013729_P003	Maize	nucleus	22.35	11.5
PGSC0003DMT400002636	Potato	extracellular	10.6	9.25
Zm00001d014568_P023	Maize	plastid	22.64	7.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	UniProt:A0A1D6QNI3	ProteinID:AQK59138.1	InterPro:DNA_pol_Y-fam_lit_finger_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	InterPro:IPR036775
PFAM:PF00817	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI000845774B
InterPro:UmuC	EnsemblPlantsGene:Zm00001d053264	EnsemblPlants:Zm00001d053264_P001	EnsemblPlants:Zm00001d053264_T001	SEG:seg	:

Description

DNA polymerase eta

Coordinates

chr4:-:223179746..223181752

Molecular Weight (calculated)

37980.0 Da

IEP (calculated)

8.265

GRAVY (calculated)

-0.134

Length

349 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHVDMD CFYVQVEQRR NPTLRGQPTV VVQYNGWKGG GLIAISYEAR GFGVKRRVPF LSSSMRGDEA KRVCSGINLV QVPVARGKAD
101: LNLYISAGVE VVAILASKGK CERASIDEVY LDLTDAAKEM LLQAPPDSPE GIFMEAAKSN ILGLPADASE KEKNVRAWLC QSEANYQDKL LACGAIIVAQ
201: LRVRVLEETQ FTCSAGIAHN KMLAKLVSGM HKPAQQTVVP SSSVQDLLAS LPMKRIKQLG GKLGSSLQDD LGVETIGDLL SFTEEKVQEQ YGVNTGTWLW
301: KTARGISGEE VEDRLLPKSH GCGKTFPGPR ALKYSASVSL LLFLGLDLR

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.