Factsheet for Zm00001d046782_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019198_P001	Maize	cytosol	100.0	100.0
Zm00001d002308_P001	Maize	cytosol	98.0	98.39
Zm00001d037012_P001	Maize	cytosol	72.8	84.26
Zm00001d053264_P001	Maize	cytosol	96.4	69.05
PGSC0003DMT400002635	Potato	cytosol	71.6	54.91
Zm00001d023711_P001	Maize	nucleus	46.0	50.44
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	86.8	43.4
Zm00001d051953_P002	Maize	nucleus	89.2	39.68
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	89.6	39.51
Zm00001d044720_P002	Maize	nucleus	83.6	39.29
Zm00001d014511_P002	Maize	nucleus	89.2	38.92
EES01500	Sorghum	nucleus	94.4	37.11
Zm00001d043404_P001	Maize	nucleus	98.0	36.24
TraesCS3A01G294700.3	Wheat	nucleus	84.4	33.65
TraesCS3D01G294800.3	Wheat	nucleus	83.6	33.23
Os01t0757800-01	Rice	cytosol	85.2	33.18
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	85.2	32.77
TraesCS3B01G329300.8	Wheat	nucleus	84.4	32.71
GSMUA_Achr10P...	Banana	cytosol	76.8	29.22
AT5G44740.2	Thale cress	nucleus	73.6	27.38
CDY39396	Canola	nucleus	70.8	26.26
Bra025107.1-P	Field mustard	nucleus	72.4	26.19
CDY60652	Canola	nucleus	69.6	25.85
KRH42423	Soybean	nucleus	70.8	25.18
Solyc01g034150.2.1	Tomato	nucleus	70.4	24.68
VIT_01s0011g01180.t01	Wine grape	nucleus	71.6	23.16
Zm00001d013729_P003	Maize	nucleus	20.0	7.37
Zm00001d014568_P023	Maize	plastid	22.4	4.96
PGSC0003DMT400002636	Potato	extracellular	2.4	1.5

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:3.30.70.270	UniProt:A0A1D6P4Z0
ProteinID:AQL05017.1	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:IPR001126	ProteinID:ONM52464.1	PFAM:PF00817	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF56672	UniParc:UPI00084405C2	InterPro:UmuC	EnsemblPlantsGene:Zm00001d046782
EnsemblPlants:Zm00001d046782_P001	EnsemblPlants:Zm00001d046782_T001	:	:	:	:

Description

DNA polymerase eta

Coordinates

chr9:-:105714744..105716334

Molecular Weight (calculated)

26981.6 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.130

Length

250 amino acids

Sequence
(BLAST)

001: MPVARPEPQE PRVIAHVDMD CFYVQGLSMR GDEAKRVCSG INLVQVPVAR GKADLNLYRS AGAEVVAILA SKGKCERASI DEVYLDLTDA AKEMLLQAPP
101: DSPEGIFMEA AKSNILGLPA DASEKEKNVR AWLCQSEADY QDKLLPCGAI IVAQLRVRVL EETQFTCSAG IAHNKMLAKL VSGMHKPAQQ TVVPSSSVQD
201: LLASLPVKKM KQLGGKLGSS LQDDLGVETI GDLLSFTEEK LQEQYGVNTG

Best Arabidopsis Sequence Match ( AT5G44740.1 )
(BLAST)

001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.