Factsheet for Solyc01g034150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046782_P001	Maize	cytosol	24.68	70.4
Zm00001d019198_P001	Maize	cytosol	24.68	70.4
Zm00001d002308_P001	Maize	cytosol	24.12	69.08
Zm00001d053264_P001	Maize	cytosol	32.96	67.34
Zm00001d037012_P001	Maize	cytosol	18.09	59.72
TraesCS3A01G294700.3	Wheat	nucleus	48.95	55.66
AT5G44740.2	Thale cress	nucleus	52.45	55.65
Os01t0757800-01	Rice	cytosol	50.07	55.61
TraesCS3D01G294800.3	Wheat	nucleus	48.95	55.48
EES01500	Sorghum	nucleus	49.09	55.03
CDY39396	Canola	nucleus	51.61	54.6
KRH42423	Soybean	nucleus	53.72	54.48
GSMUA_Achr10P...	Banana	cytosol	49.93	54.19
Bra025107.1-P	Field mustard	nucleus	52.31	53.98
CDY60652	Canola	nucleus	50.91	53.94
PGSC0003DMT400002636	Potato	extracellular	30.01	53.5
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	48.67	53.38
TraesCS3B01G329300.8	Wheat	nucleus	48.11	53.18
Zm00001d043404_P001	Maize	nucleus	49.37	52.07
VIT_01s0011g01180.t01	Wine grape	nucleus	56.24	51.88
Zm00001d023711_P001	Maize	nucleus	13.6	42.54
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	26.93	38.4
Zm00001d044720_P002	Maize	nucleus	22.72	30.45
Zm00001d051953_P002	Maize	nucleus	23.98	30.43
Zm00001d014511_P002	Maize	nucleus	23.98	29.84
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	23.42	29.45
Solyc01g107010.2.1	Tomato	nucleus	15.99	16.57
Solyc01g107510.2.1	Tomato	nucleus	16.13	11.0

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0042276
InterPro:IPR001126	InterPro:IPR036775	UniProt:K4AV97	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603
PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	SUPFAM:SSF56672	EnsemblPlantsGene:Solyc01g034150.2
EnsemblPlants:Solyc01g034150.2.1	UniParc:UPI000276314C	InterPro:UmuC	SEG:seg	:	:

Description

DNA polymerase eta [Source:Projected from Arabidopsis thaliana (AT5G44740) UniProtKB/Swiss-Prot;Acc:Q8H2D5]

Coordinates

chr1:-:36249750..36267375

Molecular Weight (calculated)

79712.3 Da

IEP (calculated)

7.166

GRAVY (calculated)

-0.570

Length

713 amino acids

Sequence
(BLAST)

001: MPVARPELSD CRVIAHVDMD CFYVQVPFNC KSFHSWVLDH CMEQRKQPSL RGQPTAVVQY NSWQGGGLIA VSYEARKFGV KRSMRGDEAK QVCPEIHLVQ
101: VPVARGKADL NAYRNAGSEV VSILSRRGRC ERASIDEVYL DLTIAAEAML ADNPSECLET ISEEVVQSHV LGLEEVGSDA RENVRHWFTR SDASRRDKLL
201: ACGAFIVAEL RLQVLEETEF TCSAGIAHNK MLAKLASGMN KPAQQTVVPF SSVSKLLRTL PIKKMKQLGG KLGTSLQIDL GVNTVGDMLQ FSEEKLQGYY
301: GVNTGSWLWN TARGINGEEV KGRLLPNSHG SGKTFPGPRA LKTVASVGKW LNELCDELSE RLQSDLEQNK RIAHTLTLHA HAYKSNDGDS FRKFPSKSCP
401: LRYGTSKIKE DALSLFQAGL REYLGLFNVK ISGNQNNGWG ITGLSVTASK IVAIPSGTRS ILNYFHNQEE AFPQVKLSSE QLIQDAPLLS PSEDSLESGG
501: HLTLQTIEPW IACREENEET KYSMSLDRQE EDKNTCKEKL PDKETSICSS PDAEVYRGWE KDQNESSRDY LTVKIRDSLE SEDGKRKSNK EKGMSTISRY
601: FQSQLSGSLL KAEHANTSRL SESSSLSDRQ SELPQENSPA RGESSVDTHL CSQIKLKRPS WSYDIDKIDQ DVLNELPKQI QEEVQAWLRP QKRPNTVKKD
701: LGITRYFLPA KDK

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.