Factsheet for Bra025107.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39396	Canola	nucleus	88.86	91.1
CDY60652	Canola	nucleus	87.26	89.6
AT5G44740.2	Thale cress	nucleus	71.78	73.81
Zm00001d019198_P001	Maize	cytosol	26.19	72.4
Zm00001d046782_P001	Maize	cytosol	26.19	72.4
Zm00001d002308_P001	Maize	cytosol	25.62	71.08
PGSC0003DMT400002635	Potato	cytosol	33.0	69.94
Zm00001d053264_P001	Maize	cytosol	34.59	68.48
Zm00001d037012_P001	Maize	cytosol	18.96	60.65
EES01500	Sorghum	nucleus	50.8	55.19
Os01t0757800-01	Rice	cytosol	50.94	54.83
KRH42423	Soybean	nucleus	55.72	54.77
TraesCS3A01G294700.3	Wheat	nucleus	48.91	53.91
TraesCS3D01G294800.3	Wheat	nucleus	48.19	52.94
GSMUA_Achr10P...	Banana	cytosol	50.22	52.82
Solyc01g034150.2.1	Tomato	nucleus	53.98	52.31
Zm00001d043404_P001	Maize	nucleus	50.8	51.92
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	48.77	51.85
TraesCS3B01G329300.8	Wheat	nucleus	48.34	51.78
VIT_01s0011g01180.t01	Wine grape	nucleus	56.15	50.19
Zm00001d023711_P001	Maize	nucleus	13.89	42.11
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	28.08	38.8
PGSC0003DMT400002636	Potato	extracellular	21.56	37.25
Zm00001d044720_P002	Maize	nucleus	24.02	31.2
Zm00001d051953_P002	Maize	nucleus	25.33	31.14
Zm00001d014511_P002	Maize	nucleus	25.33	30.54
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	24.75	30.16
Bra018821.1-P	Field mustard	nucleus	17.8	18.09
Bra025106.1-P	Field mustard	plastid	16.79	10.51

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	MapMan:14.2.1	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	EnsemblPlantsGene:Bra025107	EnsemblPlants:Bra025107.1	EnsemblPlants:Bra025107.1-P	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger
InterPro:DNA_pol_eta/kappa/iota/IV	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009650	GO:GO:0009987
GO:GO:0010224	GO:GO:0016740	GO:GO:0042276	InterPro:IPR001126	InterPro:IPR036775	UniProt:M4E8K1
PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11
SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI000253F62D	InterPro:UmuC	SEG:seg	:

Description

AT5G44740 (E=1e-202) POLH | POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase

Coordinates

chrA06:+:25200570..25204115

Molecular Weight (calculated)

76477.0 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.542

Length

691 amino acids

Sequence
(BLAST)

001: MPVARPETSD ARVIAHVDMD CFYVQVEQRK QPELRGLPTA VVQYNEWQGG ALIAVSYEAR SCGVKRSMRG EEAKAACPEI QLVQVPVARG KADLNTYRSA
101: GSEVVSILAQ SGKCERASID EVYLDLTDAA ESMLADAPPE SLESIDEEAL KSHILGMSRE DGDDFKESVR DWICRKDADR RDKLLGCGII IVAELRKQVL
201: KETEFSCSAG IAHNKARSYL FCMFLFPFIA SIMLAKLASG MNKPAQQTVV PYSAVQELLS SLPIKKMKQL GGKLGTSLQT DLGIDTVGDL LQFSETKLQE
301: HYGINTGTWL WNIARGISGE EVQGRLLPKS HGSGKTFPGP RALRSLSNVQ HWLNQLSEEL YERLSSDLEQ NKRIASTLTL HASAFISKDS DSHKKFPSKS
401: CPLRYGVTKI QEDAFNLFQA ALREYMGPFG TKPQGNKKET WRITGLSVSA SKIVDIPSGT SSIMRYFQGQ STIPSSSTSG CPQEHVAVTP SVSESCSEQK
501: SVETRASIPE EDITITYTSP DLDNSYRDSD IVLEKFPCQD ASCQSNEAKE FPTQSGTQTK TIGRKINNSK EKNRGMPSIV DIFKNYNASP QARQETQEDS
601: TVSLTSNRGN LSSSTSHNSE VNQEVEDRRD TNWGYKVGEI DQSVFDELPY EIQREFRSFL RPNKRPNAGK SKSGDGSASS SIAHYFQPLK R

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.