Factsheet for VIT_01s0011g01180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002635	Potato	cytosol	30.79	73.01
Zm00001d046782_P001	Maize	cytosol	23.16	71.6
Zm00001d019198_P001	Maize	cytosol	23.16	71.6
Zm00001d002308_P001	Maize	cytosol	22.64	70.28
Zm00001d053264_P001	Maize	cytosol	30.92	68.48
Zm00001d037012_P001	Maize	cytosol	16.95	60.65
AT5G44740.2	Thale cress	nucleus	50.06	57.59
Os01t0757800-01	Rice	cytosol	47.61	57.32
TraesCS3D01G294800.3	Wheat	nucleus	46.31	56.92
CDY39396	Canola	nucleus	49.55	56.82
CDY60652	Canola	nucleus	49.42	56.76
KRH42423	Soybean	nucleus	51.62	56.76
GSMUA_Achr10P...	Banana	cytosol	48.12	56.62
Solyc01g034150.2.1	Tomato	nucleus	51.88	56.24
Bra025107.1-P	Field mustard	nucleus	50.19	56.15
EES01500	Sorghum	nucleus	46.18	56.13
TraesCS3A01G294700.3	Wheat	nucleus	45.41	55.98
HORVU3Hr1G072920.6	Barley	cytosol, nucleus	45.67	54.31
TraesCS3B01G329300.8	Wheat	nucleus	44.89	53.8
Zm00001d043404_P001	Maize	nucleus	46.18	52.81
PGSC0003DMT400002636	Potato	extracellular	22.12	42.75
Zm00001d023711_P001	Maize	nucleus	12.55	42.54
Zm00001d031070_P002	Maize	cytosol, nucleus, peroxisome	25.87	40.0
Zm00001d051953_P002	Maize	nucleus	23.16	31.85
Zm00001d044720_P002	Maize	nucleus	21.86	31.77
Zm00001d014511_P002	Maize	nucleus	23.03	31.06
Zm00001d014510_P002	Maize	nucleus, peroxisome, plastid	22.38	30.51
VIT_03s0091g00860.t01	Wine grape	nucleus	16.82	18.47
VIT_03s0091g00200.t01	Wine grape	plastid	16.69	10.98

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	EntrezGene:100266192	wikigene:100266192	MapMan:14.2.1
Gene3D:2.30.40.20	Gene3D:3.30.1490.100	Gene3D:3.30.70.270	ProteinID:CBI27227	ProteinID:CBI27227.3	UniProt:D7T9Q5
InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009650	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740	GO:GO:0042276
InterPro:IPR001126	InterPro:IPR036775	EntrezGene:LOC100266192	wikigene:LOC100266192	PFAM:PF00817	PFAM:PF11799
PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF11	SUPFAM:SSF100879	SUPFAM:SSF56672
UniParc:UPI00019828E7	InterPro:UmuC	ArrayExpress:VIT_01s0011g01180	EnsemblPlantsGene:VIT_01s0011g01180	EnsemblPlants:VIT_01s0011g01180.t01	unigene:Vvi.19778
RefSeq:XP_002275643	RefSeq:XP_002275643.2	RefSeq:XP_010649254.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:1002402..1009569

Molecular Weight (calculated)

85877.6 Da

IEP (calculated)

5.562

GRAVY (calculated)

-0.600

Length

773 amino acids

Sequence
(BLAST)

001: MPVAKPESSD ARIIAHIDMD CFYVQVEQRK QPDLRGLPTA VVQYNSWKGG GLIAVSYEAR KFGVKRSMRG DEAKQVCPQI QLVQVPVARG KADLNVYRNA
101: GSEVVSILAR KGRCERASID EVYLDLTDAA EAMLAEMPPE SLEAIDEEAL KSHVLGLNEG GNDIKESVRV WLCRSQADHR DKLLACGALI VAELRMQVFR
201: ETEFTCSAGI AHNKMLAKLA SAMNKPAQQT IVPLSCVRGL LGSLPIKKMK QLGGKLGSSL QSDLGVNTVG DLLQFSEEKL QECYGINTGT WLWNIARGIS
301: GEEVESRLLS KSHGSGKTFP GPKALKTIAS VENWLNELCE ELDERLRSDL EQNKRIAHTL TLHARAYKSN DSDSHKKFPS KSCPLRYGIA KIQEDALNLF
401: QAGLREYLGS CKVKTRANQC SGWSITALSV SASKIVAIPT GTCSIMKYFH GQDLSSSSLK QPQDRSTEEA ASLSHSGSES YLGLNPRETQ KQFPGEETRI
501: NYDMPNLDQQ EKKRKMWEDQ GTPSILRFFK RHNPTSSLSE QEQVEPIQDT KVSSSSGLWT TSESCSETGQ IQLPKEMMVA ETESNARRDS SAAKRNDGYK
601: IDDIDCSVMD ELPPEIQEEV QARSSEDLNQ VQLPKEMMVA ETESNARRDS SAAKRNDGYK IDDIDCSVMD ELSPEIQEEV QAWSSEELNQ VQLPKETMAA
701: ETGPNDRRCS LGGGAERRET WSYKIDEIDP SVMDELPPEI RAEVQAWLRP QKPAKTGKRG SSIAHYFSPM KNK

Best Arabidopsis Sequence Match ( AT5G44740.2 )
(BLAST)

001: MPVARPEASD ARVIAHVDMD CFYVQVEQRK QPELRGLPSA VVQYNEWQGG GLIAVSYEAR KCGVKRSMRG DEAKAACPQI QLVQVPVARG KADLNLYRSA
101: GSEVVSILAK SGKCERASID EVYLDLTDAA ESMLADAPPE SLELIDEEVL KSHILGMNRE DGDDFKESVR NWICREDADR RDKLLSCGII IVAELRKQVL
201: KETEFTCSAG IAHNKMLAKL ASGMNKPAQQ TVVPYAAVQE LLSSLPIKKM KQLGGKLGTS LQTDLGVDTV GDLLQFSETK LQEHYGVNTG TWLWNIARGI
301: SGEEVQGRLL PKSHGSGKTF PGPRALKSLS TVQHWLNQLS EELSERLGSD LEQNKRIAST LTLHASAFRS KDSDSHKKFP SKSCPMRYGV TKIQEDAFNL
401: FQAALREYMG SFGIKPQGNK LETWRITGLS VSASKIVDIP SGTSSIMRYF QSQPTVPSRS ADGCVQGNVA MTASASEGCS EQRSTETQAA MPEVDTGVTY
501: TLPNFENQDK DIDLVSEKDV VSCPSNEATD VSTQSESNKG TQTKKIGRKM NNSKEKNRGM PSIVDIFKNY NATPPSKQET QEDSTVSSAS KRAKLSSSSH
601: NSQVNQEVEE SRETDWGYKT DEIDQSVFDE LPVEIQRELR SFLRTNKQFN TGKSKGDGST SSIAHYFPPL NR

Arabidopsis Description

POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.