Factsheet for VIT_03s0091g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77949	Soybean	plastid	54.47	57.4
Solyc01g107510.2.1	Tomato	nucleus	48.34	54.35
CDY39397	Canola	plastid	47.4	52.7
CDY60654	Canola	plastid	46.81	52.03
AT5G44750.2	Thale cress	plastid	48.26	51.31
Bra025106.1-P	Field mustard	plastid	46.89	49.91
GSMUA_Achr10P...	Banana	nucleus, plastid	18.98	49.34
Os06t0691000-01	Rice	plastid	43.32	45.24
KXG20701	Sorghum	plastid	42.64	44.49
Zm00001d014568_P023	Maize	plastid	42.64	44.38
TraesCS7A01G436200.3	Wheat	plastid	42.89	43.0
TraesCS7B01G335900.1	Wheat	plastid	42.81	42.95
TraesCS7D01G426800.1	Wheat	plastid	42.72	42.72
GSMUA_Achr10P...	Banana	nucleus	24.94	41.44
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	41.36	41.43
VIT_03s0091g00860.t01	Wine grape	nucleus	10.98	18.32
VIT_01s0011g01180.t01	Wine grape	nucleus	10.98	16.69

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.20	EntrezGene:100247553	wikigene:100247553	MapMan:14.2.5
Gene3D:2.30.40.20	Gene3D:3.30.1490.100	Gene3D:3.30.70.270	Gene3D:3.40.50.10190	InterPro:BRCT_dom	InterPro:BRCT_dom_sf
ProteinID:CCB47733	ProteinID:CCB47733.1	ncoils:Coil	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	UniProt:F6H6A4
EMBL:FN595242	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824
GO:GO:0003887	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0016740
GO:GO:0016779	GO:GO:0042276	GO:GO:0071897	InterPro:IPR001126	InterPro:IPR001357	InterPro:IPR036420
InterPro:IPR036775	EntrezGene:LOC100247553	wikigene:LOC100247553	PFAM:PF00817	PFAM:PF11799	PFAM:PF16589
PIRSF:PIRSF036573	PFscan:PS50172	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF12	InterPro:REV1
SMART:SM00292	SUPFAM:SSF100879	SUPFAM:SSF52113	SUPFAM:SSF56672	UniParc:UPI0002109AA3	InterPro:UmuC
ArrayExpress:VIT_03s0091g00200	EnsemblPlantsGene:VIT_03s0091g00200	EnsemblPlants:VIT_03s0091g00200.t01	RefSeq:XP_002268899	RefSeq:XP_002268899.2	RefSeq:XP_010647966.1
SEG:seg	:	:	:	:	:

Description

DNA repair protein REV1 [Source:UniProtKB/TrEMBL;Acc:F6H6A4]

Coordinates

chr3:-:6479048..6503929

Molecular Weight (calculated)

130967.0 Da

IEP (calculated)

7.322

GRAVY (calculated)

-0.462

Length

1175 amino acids

Sequence
(BLAST)

0001: MSLNSSRSAN SGERSKRSLN STSSNPSNNS GKKRKTGNQK TLGMAWGSNS RSSSRSSFRN SPFSDFGSYM VEKNRKLQNQ FDAGASSSSH SALSSGKPIF
0101: HGVSVFVDGF TIPSSQELRG YMMRHGGHFE NYFSRHRVTH IICSNLPDSK IKNLRSFSGG LPVVKPTWVL DSVAANKLLS WIPYQLDQLA NETRNQPKLS
0201: AFFALKSIPV FEDAVTHTTY PLVPETEDSV FKGGTSKDAV SSEGGQYLEY TRQSSGEIDD HQCENTNETI IEKPFSNDEK SSEIKMEEQS FSNQEEECSI
0301: KNELQSSPHR PSASVSSYYL DNARKESSST TVVGCSNKGH STLEDPNFVE NYFKYSRLHF IGTWRNRYQK RFPRLSNEFK HTSSDLNASG VSQKNVIIHM
0401: DMDCFFVSVV IRNNPELQDK PVAVCHSNNP KGTAEISSAN YPARDYGVKA GIFVRDAKAL CPHLVIFPYN FEAYEEVADQ FYNILHKHCN KVQAVSCDEA
0501: FLEVMDSKEG DPELLASIIR KEIFETTGCT ASAGIAGNLL MARLATRSAK PNGQCYIPVD KVDDYLHQLP IKALPGIGHV LEEKLRRRKV HTCGQLRMIS
0601: KESLQRDFGT KTGDMLWNYC RGVDNRVVGV IQESKSIGAE VNWGVRFNDL KDSRHFLVNL CKEVTLRLKG CGVQGRTFTL KMKKRRKDAG EPAKYMGCGD
0701: CENLSHSMTV PLATDDVDVI QRIATQLFGF FHIDVKDIRG IGLQVSRLEN ADTAKQGHQR ISIRSWLTSA PATNEELCKT SCLVRKERAV ADGEKQSTDI
0801: SLGQLSNDSK RPSLQMSPSS SNNEAPLNQV SELPALCDLD MGVLESLPPE LLSEINDMYA GKLSDFIRKR KGKNENVSGT MCTTSYEIYE GAINNGKQLH
0901: CSIVPIRKTP VENKVEKTLD REIATENSLL QSSEVEKVKQ YKIDEIQEVS VSGAVSLNVV DPASALEKSD LMPSSLSQVD ISVLQQLPKE MWVDILEQLP
1001: VHRKPEHSSS AALDPLIANA QESLCFKHTE NNSKSVDSVL GNNLWIGNPP QWVDKFKVSN CLLLNILAEM YYRSGSTGCL SSILQCTLSK FLLPLDASSD
1101: GWDETISSLC DLLKQYIKIK IESDIEEIYV CFRLLKRFTM KSKLFLEAYN VVFPYLQASA GENYGGSLQL SHAKE

Best Arabidopsis Sequence Match ( AT5G44750.1 )
(BLAST)

0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI
0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS
0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG
0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV
0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE
0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG
0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VQHFLQCLCK EVSLRLQGCE MIGRTFTLKI KKRKKDAEEP TKYMGCGDCD NLSRSITVPA ATDDIEVLQR
0701: ISKKLFGSFC LDVKEVRGVG LQVSKLDSAD PSNKGSRTLK SWLSSAPAVV QIEQDDNVFA AKVRENSDCN RPVTGGVSRL RESNSEESSI QSGDTNSSLP
0801: PMCYLDMEVL ENLPPELLSE LDGTYGGKLF ELIEKKRGKR RINCNSPHVS LDGTAASIKE LKSLSVKIHG LSTSGEKEYK EPYVPHPSIA RTSNQHTIEM
0901: TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF
1001: KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI
1101: P

Arabidopsis Description

REV1DNA repair protein REV1 [Source:UniProtKB/Swiss-Prot;Acc:A3EWL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.