Factsheet for GSMUA_Achr10P08950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77949	Soybean	plastid	47.57	19.28
Solyc01g107510.2.1	Tomato	nucleus	44.25	19.14
Os06t0691000-01	Rice	plastid	47.57	19.11
VIT_03s0091g00200.t01	Wine grape	plastid	49.34	18.98
KXG20701	Sorghum	plastid	47.12	18.92
Zm00001d014568_P023	Maize	plastid	47.12	18.87
CDY60654	Canola	plastid	44.03	18.83
CDY39397	Canola	plastid	43.58	18.64
TraesCS7B01G335900.1	Wheat	plastid	47.79	18.45
AT5G44750.2	Thale cress	plastid	44.91	18.37
TraesCS7D01G426800.1	Wheat	plastid	47.57	18.3
TraesCS7A01G436200.3	Wheat	plastid	47.12	18.17
HORVU7Hr1G099700.8	Barley	cytosol, mitochondrion, nucleus, plastid	46.9	18.07
Bra025106.1-P	Field mustard	plastid	43.14	17.66
GSMUA_Achr1P18160_001	Banana	nucleus	12.17	11.41
GSMUA_Achr5P01740_001	Banana	nucleus	9.73	6.81
GSMUA_Achr10P...	Banana	cytosol	8.19	5.63
GSMUA_Achr10P...	Banana	nucleus	0.44	0.28

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	MapMan:14.2.5	Gene3D:2.30.40.20	Gene3D:3.30.70.270	Gene3D:3.40.50.10190
InterPro:BRCT_dom	InterPro:BRCT_dom_sf	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G08950_001	EnsemblPlants:GSMUA_Achr10P08950_001	EnsemblPlants:GSMUA_Achr10T08950_001
InterPro:IPR001126	InterPro:IPR001357	InterPro:IPR036420	UniProt:M0RGM1	PFAM:PF00533	PFAM:PF00817
PFscan:PS50172	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF12	SMART:SM00292	SUPFAM:SSF52113
SUPFAM:SSF56672	UniParc:UPI000295A2EB	InterPro:UmuC	SEG:seg	:	:

Description

Putative DNA repair protein rev1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G08950_001]

Coordinates

chr10:+:18961802..18965745

Molecular Weight (calculated)

49934.0 Da

IEP (calculated)

8.759

GRAVY (calculated)

-0.419

Length

452 amino acids

Sequence
(BLAST)

001: MNSRSSSRAA SNAAAFPSSS APSGDSRKRS RNPPTTNPQR PLRSKTKAPF ADFRSYMVEK NRKLRAQFQA DATTSSLGAG SGRADSGDDK GIFHGVSIFV
101: DGFTIPSSQE LRGYMLKHGG RFENYFSKHT VTHIICGNLP DSKMRNLRAF SHGLPVVRPQ WVLDCLAANG LLSCEFSGIS SCNDARTTVN QDVKIDVDPK
201: QLVLPPEGQC FRCDGPSGQA TEELECMKVE KLYGEINANP ESTDLEVKFS VPPASGAIPS PLSMINKSYM GHQKIHESLD SSVNCIGASN QVHSTLTDPN
301: FVENYFKSSR LHFIGTWRNR YRKRFSNLLT GYKSSNEKTN CCVAKQKASI IHVDMDCFFV SVIIRNFPDL VDKPVAVCHS NNPRGTAEIS SANYVARNYG
401: VKAGTFVRDA KACCPHLVIL PYDFEAYEEV AEQFYSILHK HCSKVQVHVT SF

Best Arabidopsis Sequence Match ( AT5G44750.2 )
(BLAST)

0001: MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV KNRKLQNQFE TEASAASRGV SGSEKLIFQG VSIFVDGFTI
0101: PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQLNDT QPKLSAFFAP RSHLTPQMAS
0201: PVTSFQPDTG YSEAEEGSSI RADDSEEARD HIDDEIDGVY IENTTPELTE QTGTGDLKSS EMNAEGLGNY DIEEKEVSSE LQSTTNLHST SDNKSVHANG
0301: KNGGKSIATA AGSSTRRHST LEDPNFVENY FKNSRLHFIG TWRNRYRKRF HGSSNGLKWA DSGQNTAEMA KKSTIIHIDL DCFFVSVVIK NRLELHDKPV
0401: AVCHSDNPKG TAEISSANYP ARAYGVKAGM FVRHAKDLCP QLVIVPYNFE AYEEVADQFY DILHRHCRKV QALSCDEAFL DVSDLSDVET EVLASTIRNE
0501: ILETTGCSAS AGIGGTMLMA RLATRVAKPA GQLYISAEKV EEFLDQLPVG TLPGVGSVLK EKLVKQNIQT CGQLRLISKD SLQKDFGVKT GEMLWSYSRG
0601: LDLRSVTAVQ ESKSIGAEVN WGVRFRDQQD VFILVQHFLQ CLCKEVSLRL QGCEMIGRTF TLKIKKRKKD AEEPTKYMGC GDCDNLSRSI TVPAATDDIE
0701: VLQRISKKLF GSFCLDVKEV RGVGLQVSKL DSADPSNKGS RTLKSWLSSA PAVVQIEQDD NVFAAKVREN SDCNRPVTGG VSRLRESNSE ESSIQSGDTN
0801: SSLPPMCYLD MEVLENLPPE LLSELDGTYG GKLFELIEKK RGKRRINCNS PHVSLDGTAA SIKELKSLSV KIHGLSTSGE KEYKEPYVPH PSIARTSNQH
0901: TIEMTDLLPS SLSQVDVSVL QELPEELRAD VLGAFPSHRR QQSSSDVPKE TCKKQDEEPI DLKGTENEIG LSFSSLWFGN PPLWTEKFKV SGNCTMEKLS
1001: AIYFKVAQSR PMLSLVLQHA ISEMSSFPDA ASASDLDKAI YDVCELLKQY INLKVGGDIE EIYLCFRLLK RLAARSQLFL QVYEILSPFI QASISEHYGG
1101: SLSIP

Arabidopsis Description

REV1DNA repair protein REV1 [Source:UniProtKB/Swiss-Prot;Acc:A3EWL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.