Factsheet for GSMUA_Achr5P01740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38024	Sorghum	nucleus	57.74	59.02
HORVU4Hr1G013680.2	Barley	nucleus	57.28	56.49
TraesCS4A01G234800.1	Wheat	nucleus	57.12	56.42
TraesCS4B01G080200.1	Wheat	nucleus	56.66	55.88
Zm00001d013729_P003	Maize	nucleus	58.2	55.46
Os03t0616300-01	Rice	nucleus	52.94	55.43
Solyc01g107010.2.1	Tomato	nucleus	57.43	53.92
CDY50970	Canola	nucleus	53.56	52.91
PGSC0003DMT400066146	Potato	nucleus	56.19	52.76
CDY28119	Canola	nucleus	53.72	52.58
KRH27580	Soybean	nucleus	54.95	52.36
AT1G49980.1	Thale cress	nucleus	53.25	51.27
VIT_03s0091g00860.t01	Wine grape	nucleus	55.73	51.14
Bra018821.1-P	Field mustard	nucleus	52.94	50.29
KRH77930	Soybean	cytosol	48.61	50.0
GSMUA_Achr10P...	Banana	cytosol	16.25	15.98
GSMUA_Achr10P...	Banana	nucleus	13.0	11.88
GSMUA_Achr1P18160_001	Banana	nucleus	7.43	9.96
GSMUA_Achr10P...	Banana	nucleus, plastid	6.81	9.73

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003697	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0071897	EnsemblPlantsGene:GSMUA_Achr5G01740_001	EnsemblPlants:GSMUA_Achr5P01740_001	EnsemblPlants:GSMUA_Achr5T01740_001	InterPro:IPR001126	InterPro:IPR036775
UniProt:M0SUV3	PFAM:PF00817	PFAM:PF11798	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173
PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	InterPro:PolY_HhH_motif	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI000294986E
InterPro:UmuC	SEG:seg	:	:	:	:

Description

DNA-directed polymerase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G01740_001]

Coordinates

chr5:-:1022760..1034149

Molecular Weight (calculated)

72675.6 Da

IEP (calculated)

6.339

GRAVY (calculated)

-0.348

Length

646 amino acids

Sequence
(BLAST)

001: MEATSDGDRP WQSYHTVYTN AKAGMEGVDK EKVQKIIYEL SKGSKYFENE KRKEAIIKQK IDNLRTHHAK LTEKEISHFQ MIADNRILEL EASRDLSKIW
101: LHIDMDAFYA AVETLENPSL KGKPLAVGSM SMICTASYEA RKYGVRAAMP GFIARKLCPD LIFVPTNFEK YTYYSELTRN VFSKYDPDFI ATSLDEAYLN
201: ITDICSQRGI GCEEVAVELR NTIFQETRLT CSVGVAPNRM LAKVCSDINK PNGQFILPND YNAVMTFISS LPIRKVGGIG KVTEQILRDV LGINTCADIL
301: HKGAVLYALF HQCSTDFFLS VGLGLGGTDT PQQKMRKSIS NEKTFSATND ESIIFQKLAD IAETLSKDMQ KECLLGRTLT LKLKTASFEV RTRATSLQKF
401: VNSKEDILIY ASKLLRAELP ISARLMAGLR MSHFHDDKHS PLDPMQKTLT SFLTIGNVAP IADKSTGFDT SDIQLMYNTK SDISVDDEST FLSDVSSFSY
501: ESCDFLETNQ LSVPDYVAVS YGNGAESLNE CPKTQNKFES AEKISDVSNL FDRKRVAASS SQILEPYWVD DYICSACGIE VPASFTEERR EHLDYHLADM
601: LQKEECRSLL QSFPHKESAR KKRKSSGNQG KYIPIDSFFV KEDKSL

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.