CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50970	Canola	nucleus	94.85	95.72
AT1G49980.1	Thale cress	nucleus	85.0	83.61
Solyc01g107010.2.1	Tomato	nucleus	60.0	57.56
KRH27580	Soybean	nucleus	59.09	57.52
VIT_03s0091g00860.t01	Wine grape	nucleus	61.06	57.24
PGSC0003DMT400066146	Potato	nucleus	59.55	57.12
KRH77930	Soybean	cytosol	52.88	55.57
KXG38024	Sorghum	nucleus	51.67	53.96
GSMUA_Achr5P01740_001	Banana	nucleus	52.58	53.72
HORVU4Hr1G013680.2	Barley	nucleus	52.73	53.13
TraesCS4A01G234800.1	Wheat	nucleus	52.12	52.6
TraesCS4B01G080200.1	Wheat	nucleus	51.52	51.91
Zm00001d013729_P003	Maize	nucleus	52.42	51.03
Os03t0616300-01	Rice	nucleus	47.27	50.57
CDY39396	Canola	nucleus	18.64	18.25
CDY60652	Canola	nucleus	18.48	18.13
CDY39397	Canola	plastid	20.15	12.58
CDY60654	Canola	plastid	19.55	12.2

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	MapMan:14.2.3	Gene3D:2.30.40.20	Gene3D:3.30.1490.100
Gene3D:3.30.70.270	GO:A0A078GSG6	UniProt:A0A078GSG6	EnsemblPlants:CDY28119	ProteinID:CDY28119	ProteinID:CDY28119.1
InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0003887	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0071897	EnsemblPlantsGene:GSBRNA2T00039087001	InterPro:IPR001126	InterPro:IPR036775
HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799	PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076
PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672	UniParc:UPI0004EEAF20	InterPro:UmuC	SEG:seg

Description

BnaC06g03000DBnaC06g03000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSG6]

Coordinates

chrLK032214:+:318268..321896

Molecular Weight (calculated)

73910.6 Da

IEP (calculated)

7.531

GRAVY (calculated)

-0.601

Length

660 amino acids

Sequence
(BLAST)

001: MDEGESSSTN NPSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSSD LSNYQKVVDR RILELEATRD
101: LSRVWLHVDM DAFYAAVETL SNPSLKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFPKYTHYS DLTRNVFKNY DPNFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVHS ETGGLTCSAG VAANRLLAKV CSDINKPNGQ FVLQNDRSTV MTFISSLPIR KIGGIGKVTE HILKDALEIK
301: TCGDMVLKGS LLYALFTQSS ADFFLSVGLG LGKTDTPEVR SRKSISSERT FAATGDERLL YSKLAEIAEM LSHDMKKEGL TARTLTLKLK TASFEIRSRA
401: VSLQRYTCSS EDILKHATKL LKAELPVSIR LIGLRMSQFN EEARHSDPSQ GTITKFIVQK GSSRKNLDDN DSFDLDASKN CLGNDEMLSL SYASHETSYD
501: QLKDVVEYEE QSVTPEQECK KEEERPQVLE GDALLRKHKE SKSETSAQNT EAVSVFPQME PLLWVNGYKC NLCGIELPPS FVEERQEHSD FHLAQRLQNE
601: ESGPSSSTTP PSKRRILGKE KANSKPKKQK PNQKDGSKHI PIHTFFTKSN QNSNDETQKK

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.