Factsheet for VIT_03s0091g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27580	Soybean	nucleus	61.22	63.57
Solyc01g107010.2.1	Tomato	nucleus	61.36	62.79
PGSC0003DMT400066146	Potato	nucleus	60.8	62.21
CDY50970	Canola	nucleus	56.96	61.31
CDY28119	Canola	nucleus	57.24	61.06
KRH77930	Soybean	cytosol	53.84	60.35
AT1G49980.1	Thale cress	nucleus	56.68	59.46
Bra018821.1-P	Field mustard	nucleus	56.68	58.68
GSMUA_Achr5P01740_001	Banana	nucleus	51.14	55.73
KXG38024	Sorghum	nucleus	49.57	55.22
HORVU4Hr1G013680.2	Barley	nucleus	51.14	54.96
TraesCS4A01G234800.1	Wheat	nucleus	50.71	54.59
Os03t0616300-01	Rice	nucleus	47.44	54.13
TraesCS4B01G080200.1	Wheat	nucleus	50.14	53.89
Zm00001d013729_P003	Maize	nucleus	51.85	53.83
VIT_01s0011g01180.t01	Wine grape	nucleus	18.47	16.82
VIT_03s0091g00200.t01	Wine grape	plastid	18.32	10.98

Protein Annotations

KEGG:00230+2.7.7.7	KEGG:00240+2.7.7.7	Gene3D:1.10.150.810	EntrezGene:100253205	MapMan:14.2.3	Gene3D:2.30.40.20
Gene3D:3.30.1490.100	Gene3D:3.30.70.270	ProteinID:CBI22452	ProteinID:CBI22452.3	ncoils:Coil	UniProt:D7SXQ2
InterPro:DNA_pol_Y-fam_lit_finger_sf	InterPro:DNA_pol_Y-fam_little_finger	InterPro:DNA_pol_eta/kappa/iota/IV	InterPro:DNApol_IV	EMBL:FN595242	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003697	GO:GO:0003824	GO:GO:0003887
GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016740
GO:GO:0071897	InterPro:IPR001126	InterPro:IPR036775	HAMAP:MF_01113	PFAM:PF00817	PFAM:PF11799
PIRSF:PIRSF036603	PFscan:PS50173	PANTHER:PTHR11076	PANTHER:PTHR11076:SF33	SUPFAM:SSF100879	SUPFAM:SSF56672
UniParc:UPI0001BE1EA7	InterPro:UmuC	ArrayExpress:VIT_03s0091g00860	EnsemblPlantsGene:VIT_03s0091g00860	EnsemblPlants:VIT_03s0091g00860.t01	RefSeq:XP_010647919.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:7324113..7339946

Molecular Weight (calculated)

79112.6 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.511

Length

704 amino acids

Sequence
(BLAST)

001: MEKAEAEPSA SADSARPWQS YTTVYTNAKA GMDGVDKEKV QRTVYEMSKG SKYFENEERK EAFIRQKIDN MRARCAKLSA SDISHYQMVA DKRILELEAT
101: RDLSRIWLHV DMDAFYAAVE TLDNPSLRGR PMAVGGMSMI STANYEARKF GVRAAMPGFI ARKLCPELIF VPTDFKKYTY YSDLTRKVFQ KYDPNFMAAS
201: LDEAYLDITE VCNERDLTSG EIAEELRTSV HEVTGLTCSA GVAPNRLLAK VCSDINKPNG QFVLPSNRMA VMTFISSLPI RKIGGIGKVT EHILSGVFGI
301: NTCEEMLQKG GFLCALFSRS SADFFLSVGL GLGKTDTPQV RFRKSISNER TFSATDDTAL LYQKLAELSE MLSIDMQKEG LSGRTLTLKL KTASFEVRSR
401: AVTMQKYICS REDILNHALK LLNAELPLSL RLIGLRISHF NEDKDGHLSD PTQKTLANFI ISGDASGKNV CEHSLLGSDT SDSHFMVDPE NDLSIDNHET
501: CHYVSEDLLD SNLLSDLDHC NFNLSNNSGK IDNNNELPLN GSVAKVNAPN VVGCAPKSHQ IKVSHLVEAD SFSFSEQCES NRPDRARRTN NDLDDGVPSS
601: NQKEQFLWVN DYKCSLCGIE LPPNFVEERQ EHFDFHLAEK LQKEESDNSR NLMLNQRFSQ RDHTASQRRH KRHKSSKKEG SKSSQKESKH LPIDMFFVKS
701: NQNF

Best Arabidopsis Sequence Match ( AT1G49980.1 )
(BLAST)

001: MDNGESSSTN NSSRPWESYN TVFTNAKAGM EGVDKEKVQR VVYEMSKGSK YFQNEERKEA LMKQKIEHMR DRCAKLSSLD LSNYQKVVDK RILELEATRD
101: LSRIWLHVDM DAFYAAVETL SDPSIKGKPM AVGGLSMIST ANYEARKFGV RAAMPGFIAR KLCPDLIFVP VDFTKYTHYS DLTRKVFRNY DPHFIAGSLD
201: EAYLDITEVC RERGLSGGEI AEELRSSVYS ETGLTCSAGV AANRLLAKVC SDINKPNGQF VLQNDRSTVM TFVSFLPVRK IGGIGKVTEH ILKDALGIKT
301: CEEMVQKGSL LYALFSQSSA DFFLSVGLGL GGTNTPQVRS RKSISSERTF AATGDERLLY SKLDELAEML SHDMKKEGLT ARTLTLKLKT ASFEIRSRAV
401: SLQRYTCSSD DILKHATKLL KAELPVSVRL IGLRMSQFVE EIRNSDPSQG TITKFIVQKD SSRQAQDLDD NDSFDLDANK NCLSNDESGN VSFGSHETSS
501: AHLKDVVEYE ERSQIDSGKV IPNQECMKKE ERLQILEGDS LLKKYKECKP DTSHSMNDNS NATEAVSVFP QTEPLYWIDG YKCVLCGIEL PPSFVEERQE
601: HSDFHLAQRL QNEETGSSSS TTPSKRRILG KEKVNSKPKK QKPDQKDSSK HIPIHAFFTK SNQNSNETQR K

Arabidopsis Description

POLKDNA polymerase kappa [Source:UniProtKB/Swiss-Prot;Acc:Q6JDV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.