Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046782_P001 | Maize | cytosol | 50.44 | 46.0 |
| Zm00001d019198_P001 | Maize | cytosol | 50.44 | 46.0 |
| Zm00001d002308_P001 | Maize | cytosol | 50.0 | 45.78 |
| Zm00001d037012_P001 | Maize | cytosol | 32.46 | 34.26 |
| Zm00001d053264_P001 | Maize | cytosol | 50.88 | 33.24 |
| PGSC0003DMT400002635 | Potato | cytosol | 43.42 | 30.37 |
| Zm00001d031070_P002 | Maize | cytosol, nucleus, peroxisome | 50.88 | 23.2 |
| Zm00001d044720_P002 | Maize | nucleus | 51.32 | 21.99 |
| Zm00001d051953_P002 | Maize | nucleus | 51.75 | 21.0 |
| Zm00001d014510_P002 | Maize | nucleus, peroxisome, plastid | 51.32 | 20.63 |
| Zm00001d014511_P002 | Maize | nucleus | 51.75 | 20.59 |
| EES01500 | Sorghum | nucleus | 51.75 | 18.55 |
| TraesCS3A01G294700.3 | Wheat | nucleus | 49.56 | 18.02 |
| Zm00001d043404_P001 | Maize | nucleus | 52.63 | 17.75 |
| TraesCS3D01G294800.3 | Wheat | nucleus | 48.68 | 17.65 |
| TraesCS3B01G329300.8 | Wheat | nucleus | 49.12 | 17.36 |
| HORVU3Hr1G072920.6 | Barley | cytosol, nucleus | 49.12 | 17.23 |
| Os01t0757800-01 | Rice | cytosol | 47.81 | 16.98 |
| GSMUA_Achr10P... | Banana | cytosol | 45.18 | 15.68 |
| AT5G44740.2 | Thale cress | nucleus | 42.98 | 14.58 |
| Bra025107.1-P | Field mustard | nucleus | 42.11 | 13.89 |
| KRH42423 | Soybean | nucleus | 42.54 | 13.8 |
| CDY39396 | Canola | nucleus | 40.35 | 13.65 |
| Solyc01g034150.2.1 | Tomato | nucleus | 42.54 | 13.6 |
| CDY60652 | Canola | nucleus | 39.47 | 13.37 |
| VIT_01s0011g01180.t01 | Wine grape | nucleus | 42.54 | 12.55 |
| Zm00001d013729_P003 | Maize | nucleus | 18.86 | 6.34 |
| Zm00001d014568_P023 | Maize | plastid | 21.49 | 4.34 |
| PGSC0003DMT400002636 | Potato | extracellular | 1.75 | 1.0 |
Protein Annotations
| KEGG:00230+2.7.7.7 | KEGG:00240+2.7.7.7 | Gene3D:1.10.150.20 | MapMan:14.2.1 | Gene3D:3.30.70.270 | UniProt:A0A1D6IV17 |
| ProteinID:AQK39856.1 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR001126 | PFAM:PF00817 | PFscan:PS50173 | PANTHER:PTHR11076 |
| PANTHER:PTHR11076:SF11 | SUPFAM:SSF56672 | UniParc:UPI0008444EB2 | InterPro:UmuC | EnsemblPlantsGene:Zm00001d023711 | EnsemblPlants:Zm00001d023711_P001 |
| EnsemblPlants:Zm00001d023711_T001 | : | : | : | : | : |
Description
DNA polymerase eta
Coordinates
chr10:-:16567942..16571235
Molecular Weight (calculated)
25765.1 Da
IEP (calculated)
9.590
GRAVY (calculated)
-0.352
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNKPSNLS SDRKDHHLSL CSLQKQGWSQ VYEYRTRSGS HHHNFLVNKI FLENAFDAVM HFVTVAYVGV MQRKCSYKLP QIHQRGFLWR QQSQISWAFR
101: LEKEKNVRAW LCQSEADYQD KLLACGAIIV AQLRVRVLEE TQFTCSAGIA HNKMLAKLVS GMHKPAQQTV VPSSSVQDLL ASLPVKKMKQ LGGKLGSSLQ
201: DDLGVETIGD LLSFTEEKLQ EQYGVNTG
101: LEKEKNVRAW LCQSEADYQD KLLACGAIIV AQLRVRVLEE TQFTCSAGIA HNKMLAKLVS GMHKPAQQTV VPSSSVQDLL ASLPVKKMKQ LGGKLGSSLQ
201: DDLGVETIGD LLSFTEEKLQ EQYGVNTG
001: MRLKLLVLRF NWFKFLWLVV VSILAKSGKC ERASIDEVYL DLTDAAESML ADAPPESLEL IDEEVLKSHI LGMNREDGDD FKESVRNWIC REDADRRDKL
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR
101: LSCGIIIVAE LRKQVLKETE FTCSAGIAHN KMLAKLASGM NKPAQQTVVP YAAVQELLSS LPIKKMKQLG GKLGTSLQTD LGVDTVGDLL QFSETKLQEH
201: YGVNTGTWLW NIARGISGEE VQGRLLPKSH GSGKTFPGPR ALKSLSTVQH WLNQLSEELS ERLGSDLEQN KRIASTLTLH ASAFRSKDSD SHKKFPSKSC
301: PMRYGVTKIQ EDAFNLFQAA LREYMGSFGI KPQGNKLETW RITGLSVSAS KIVDIPSGTS SIMRYFQSQP TVPSRSADGC VQGNVAMTAS ASEGCSEQRS
401: TETQAAMPEV DTGVTYTLPN FENQDKDIDL VSEKDVVSCP SNEATDVSTQ SESNKGTQTK KIGRKMNNSK EKNRGMPSIV DIFKNYNATP PSKQETQEDS
501: TVSSASKRAK LSSSSHNSQV NQEVEESRET DWGYKTDEID QSVFDELPVE IQRELRSFLR TNKQFNTGKS KGDGSTSSIA HYFPPLNR
Arabidopsis Description
POLHDNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.