Factsheet for TraesCS1A01G125100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	99.44	99.44
TraesCS1B01G144300.1	Wheat	cytosol	92.78	99.4
TraesCS3A01G136800.1	Wheat	cytosol	98.89	98.89
EES04818	Sorghum	cytosol	92.22	91.21
EES04817	Sorghum	cytosol	92.22	91.21
KXG29884	Sorghum	cytosol	92.22	91.21
KRH25821	Soybean	cytosol	91.67	91.16
KRH13277	Soybean	cytosol	91.67	91.16
KRH55687	Soybean	nucleus	91.67	91.16
KRH55704	Soybean	cytosol	91.67	91.16
KRH56423	Soybean	cytosol	91.67	91.16
KRH62493	Soybean	endoplasmic reticulum, nucleus	91.67	91.16
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	91.67	90.66
Os05t0207300-01	Rice	plasma membrane	91.67	90.66
KRH25819	Soybean	nucleus	91.11	90.61
KRH62765	Soybean	cytosol	51.67	90.29
CDY60533	Canola	cytosol	86.11	90.12
CDY00582	Canola	cytosol	86.11	90.12
CDY23103	Canola	cytosol	86.11	90.12
CDX77611	Canola	cytosol	86.11	90.12
VIT_12s0028g01800.t01	Wine grape	cytosol	86.11	89.6
CDY39447	Canola	cytosol	85.56	89.53
CDY62552	Canola	cytosol	85.56	89.53
CDX78887	Canola	cytosol	85.56	89.53
PGSC0003DMT400020315	Potato	cytosol	90.0	89.5
PGSC0003DMT400027379	Potato	cytosol	90.0	89.5
PGSC0003DMT400052643	Potato	cytosol	90.0	89.5
PGSC0003DMT400067873	Potato	cytosol	90.0	89.5
Solyc02g086240.2.1	Tomato	cytosol	90.0	89.5
Solyc07g055230.2.1	Tomato	cytosol	90.0	89.5
Solyc10g007980.2.1	Tomato	cytosol	90.0	89.5
Solyc12g010930.1.1	Tomato	extracellular	90.0	89.5
AT2G42740.1	Thale cress	cytosol	90.0	89.01
AT3G58700.1	Thale cress	cytosol	89.44	88.46
AT4G18730.1	Thale cress	cytosol	89.44	88.46
AT5G45775.2	Thale cress	cytosol	89.44	88.46
Bra021990.1-P	Field mustard	cytosol	89.44	88.46
Bra012580.1-P	Field mustard	cytosol	88.89	87.91
Bra013342.1-P	Field mustard	cytosol	88.89	87.91
Bra025058.1-P	Field mustard	cytosol	88.89	87.91
Zm00001d053547_P003	Maize	plastid	91.11	87.7
HORVU1Hr1G028820.1	Barley	mitochondrion	99.44	86.89
CDY64920	Canola	cytosol	88.33	86.89
CDX99436	Canola	cytosol, extracellular	88.33	86.41
GSMUA_Achr1P20570_001	Banana	cytosol	17.22	86.11
VIT_10s0003g01520.t01	Wine grape	cytosol	88.89	86.02
Bra017591.1-P	Field mustard	cytosol	81.67	82.58
CDX98322	Canola	cytosol	66.11	82.07
KRH56320	Soybean	cytosol, nucleus	85.56	77.39
KRH16362	Soybean	mitochondrion	37.78	76.4
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	89.44	74.19
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	89.44	74.19
CDY26360	Canola	plastid	89.44	70.93
CDX87764	Canola	mitochondrion	88.89	70.18
Solyc04g080150.1.1	Tomato	unclear	37.22	68.37
CDX71934	Canola	cytosol	89.44	63.14
CDY49245	Canola	cytosol	89.44	62.16
GSMUA_Achr1P20580_001	Banana	cytosol	16.67	61.22
VIT_03s0017g00140.t01	Wine grape	cytosol	33.89	60.4
VIT_19s0014g02400.t01	Wine grape	cytosol	35.56	60.38
VIT_17s0053g00180.t01	Wine grape	cytosol	28.33	42.15
KRH12095	Soybean	cytosol, plastid, vacuole	11.11	13.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR022803	PFAM:PF00281
PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5
InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	EnsemblPlantsGene:TraesCS1A01G125100
EnsemblPlants:TraesCS1A01G125100.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:148609016..148610836

Molecular Weight (calculated)

20689.3 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.458

Length

180 amino acids

Sequence
(BLAST)

001: MSTEKKQLNP MREIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTIRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGMKYDP STGIYGMDFF VVLERAGYRV SRRRRCKARV GIHQRVTKED AMKWFQVKYE GVILNKSHAS

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.