Factsheet for Zm00001d053547_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04818	Sorghum	cytosol	94.65	97.25
EES04817	Sorghum	cytosol	94.65	97.25
KXG29884	Sorghum	cytosol	94.65	97.25
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	94.12	96.7
Zm00001d046317_P001	Maize	plastid	93.58	96.15
Zm00001d010016_P002	Maize	cytosol	93.05	96.13
TraesCS1B01G144300.1	Wheat	cytosol	82.89	92.26
GSMUA_Achr1P20570_001	Banana	cytosol	17.65	91.67
TraesCS1A01G125100.1	Wheat	nucleus	87.7	91.11
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	87.17	90.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	86.63	90.0
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	86.63	90.0
TraesCS3B01G154600.1	Wheat	cytosol	86.63	90.0
TraesCS3A01G136800.1	Wheat	cytosol	86.63	90.0
Zm00001d016011_P001	Maize	cytosol	34.76	83.33
HORVU1Hr1G028820.1	Barley	mitochondrion	87.17	79.13
Zm00001d030198_P001	Maize	cytosol	56.15	76.09
GSMUA_Achr1P20580_001	Banana	cytosol	15.51	59.18
Zm00001d004475_P001	Maize	cytosol	26.2	57.65
Zm00001d009311_P001	Maize	nucleus	21.39	36.36
Zm00001d040878_P001	Maize	cytosol	52.94	31.94
Zm00001d000159_P001	Maize	cytosol	1.6	6.25

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	ProteinID:AQK59608.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
InterPro:IPR022803	UniProt:K7UAA5	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358
PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N
InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0002212EFF	EnsemblPlantsGene:Zm00001d053547	EnsemblPlants:Zm00001d053547_P003	EnsemblPlants:Zm00001d053547_T003
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L11-1

Coordinates

chr4:+:233618790..233621527

Molecular Weight (calculated)

21489.2 Da

IEP (calculated)

10.563

GRAVY (calculated)

-0.476

Length

187 amino acids

Sequence
(BLAST)

001: MWRVPQASEK KQSNPMREIK VQKLVLNISV GESGDRLTRA AKVLEQLSGQ TPVFSKARYT VRSFGIRRNE KIACYVTVRG DKAMQLLESG LKVKEYELLR
101: RNFSDTGCFG FGIQEHIDLG IKYDPSTGIY GMDFYVVLER AGYRVARRRR CKSRVGIQHR VTKEDSMKWF QVKYEGVILN KAQASTI

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.