Factsheet for Os02t0235600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0207300-01	Rice	plasma membrane	98.9	98.9
Os01t0205500-01	Rice	nucleus	98.35	98.35
EES04818	Sorghum	cytosol	97.8	97.8
EES04817	Sorghum	cytosol	97.8	97.8
KXG29884	Sorghum	cytosol	97.8	97.8
AT3G58700.1	Thale cress	cytosol	95.05	95.05
AT4G18730.1	Thale cress	cytosol	95.05	95.05
AT5G45775.2	Thale cress	cytosol	95.05	95.05
AT2G42740.1	Thale cress	cytosol	95.05	95.05
KRH13277	Soybean	cytosol	94.51	95.03
KRH25821	Soybean	cytosol	94.51	95.03
KRH55704	Soybean	cytosol	94.51	95.03
KRH56423	Soybean	cytosol	94.51	95.03
KRH62493	Soybean	endoplasmic reticulum, nucleus	94.51	95.03
CDX78887	Canola	cytosol	89.56	94.77
CDX77611	Canola	cytosol	89.56	94.77
CDY00582	Canola	cytosol	89.56	94.77
CDY23103	Canola	cytosol	89.56	94.77
CDY39447	Canola	cytosol	89.56	94.77
CDY60533	Canola	cytosol	89.56	94.77
CDY62552	Canola	cytosol	89.56	94.77
Bra025058.1-P	Field mustard	cytosol	94.51	94.51
Bra021990.1-P	Field mustard	cytosol	94.51	94.51
Bra013342.1-P	Field mustard	cytosol	94.51	94.51
Bra012580.1-P	Field mustard	cytosol	94.51	94.51
KRH55687	Soybean	nucleus	93.96	94.48
KRH25819	Soybean	nucleus	93.96	94.48
Zm00001d053547_P003	Maize	plastid	96.7	94.12
CDY64920	Canola	cytosol	93.96	93.44
Solyc10g007980.2.1	Tomato	cytosol	92.86	93.37
Solyc07g055230.2.1	Tomato	cytosol	92.86	93.37
Solyc12g010930.1.1	Tomato	extracellular	92.86	93.37
Solyc02g086240.2.1	Tomato	cytosol	92.86	93.37
PGSC0003DMT400067873	Potato	cytosol	92.86	93.37
PGSC0003DMT400052643	Potato	cytosol	92.86	93.37
PGSC0003DMT400027379	Potato	cytosol	92.86	93.37
PGSC0003DMT400020315	Potato	cytosol	92.86	93.37
VIT_12s0028g01800.t01	Wine grape	cytosol	88.46	93.06
CDX99436	Canola	cytosol, extracellular	93.96	92.93
TraesCS1B01G144300.1	Wheat	cytosol	85.16	92.26
TraesCS1A01G125100.1	Wheat	nucleus	90.66	91.67
TraesCS3A01G136800.1	Wheat	cytosol	90.66	91.67
TraesCS3B01G154600.1	Wheat	cytosol	90.66	91.67
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	90.66	91.67
GSMUA_Achr1P20570_001	Banana	cytosol	18.13	91.67
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	90.66	91.67
KRH62765	Soybean	cytosol	51.65	91.26
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	90.11	91.11
Os06t0550000-00	Rice	plastid	98.35	89.95
VIT_10s0003g01520.t01	Wine grape	cytosol	90.11	88.17
Bra017591.1-P	Field mustard	cytosol	84.62	86.52
CDX98322	Canola	cytosol	68.68	86.21
KRH56320	Soybean	cytosol, nucleus	89.56	81.91
HORVU1Hr1G028820.1	Barley	mitochondrion	90.11	79.61
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	94.51	79.26
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	94.51	79.26
KRH16362	Soybean	mitochondrion	37.36	76.4
CDY26360	Canola	plastid	94.51	75.77
CDX87764	Canola	mitochondrion	93.96	75.0
Solyc04g080150.1.1	Tomato	unclear	36.81	68.37
CDX71934	Canola	cytosol	94.51	67.45
CDY49245	Canola	cytosol	94.51	66.41
VIT_03s0017g00140.t01	Wine grape	cytosol	35.16	63.37
VIT_19s0014g02400.t01	Wine grape	cytosol	36.81	63.21
GSMUA_Achr1P20580_001	Banana	cytosol	15.38	57.14
VIT_17s0053g00180.t01	Wine grape	cytosol	29.12	43.8
KRH12095	Soybean	cytosol, plastid, vacuole	9.34	11.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EntrezGene:4328826	EMBL:AK120417	ProteinID:BAF08300.1	ProteinID:BAS77816.1
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR022803	EnsemblPlantsGene:Os02g0235600	EnsemblPlants:Os02t0235600-01
PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15
UniProt:Q0E2I8	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf
SUPFAM:SSF55282	UniParc:UPI0000DF061D	RefSeq:XP_015626740.1	SEG:seg	:	:

Description

Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2. (Os02t0235600-01)

Coordinates

chr2:+:7676838..7687402

Molecular Weight (calculated)

20837.3 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.498

Length

182 amino acids

Sequence
(BLAST)

001: MASEKKQSNP MREIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERAGYRV ARRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKAQAN TS

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.