Factsheet for VIT_10s0003g01520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g01800.t01	Wine grape	cytosol	88.17	94.8
CDY60533	Canola	cytosol	87.63	94.77
CDY23103	Canola	cytosol	87.63	94.77
CDY00582	Canola	cytosol	87.63	94.77
CDX77611	Canola	cytosol	87.63	94.77
CDX78887	Canola	cytosol	87.1	94.19
CDY62552	Canola	cytosol	87.1	94.19
CDY39447	Canola	cytosol	87.1	94.19
AT2G42740.1	Thale cress	cytosol	91.94	93.96
Bra021990.1-P	Field mustard	cytosol	91.4	93.41
AT5G45775.2	Thale cress	cytosol	91.4	93.41
AT4G18730.1	Thale cress	cytosol	91.4	93.41
AT3G58700.1	Thale cress	cytosol	91.4	93.41
CDY64920	Canola	cytosol	91.4	92.9
Bra025058.1-P	Field mustard	cytosol	90.86	92.86
Bra013342.1-P	Field mustard	cytosol	90.86	92.86
Bra012580.1-P	Field mustard	cytosol	90.86	92.86
CDX99436	Canola	cytosol, extracellular	91.4	92.39
TraesCS1B01G144300.1	Wheat	cytosol	82.8	91.67
Os01t0205500-01	Rice	nucleus	88.71	90.66
EES04817	Sorghum	cytosol	88.71	90.66
KXG31594	Sorghum	cytosol	88.71	90.66
KXG29884	Sorghum	cytosol	88.71	90.66
EES04818	Sorghum	cytosol	88.71	90.66
Os05t0207300-01	Rice	plasma membrane	88.17	90.11
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	88.17	90.11
TraesCS3B01G154600.1	Wheat	cytosol	86.02	88.89
TraesCS3A01G136800.1	Wheat	cytosol	86.02	88.89
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	86.02	88.89
TraesCS1A01G125100.1	Wheat	nucleus	86.02	88.89
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	86.02	88.89
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	85.48	88.33
Bra017591.1-P	Field mustard	cytosol	82.8	86.52
CDX98322	Canola	cytosol	67.2	86.21
EES17871	Sorghum	cytosol	36.02	85.9
HORVU0Hr1G003140.1	Barley	mitochondrion	32.8	83.56
Os06t0550000-00	Rice	plastid	88.71	82.91
HORVU1Hr1G032650.1	Barley	mitochondrion	39.78	81.32
KXG20149	Sorghum	cytosol	83.87	81.25
HORVU7Hr1G044560.1	Barley	mitochondrion	40.32	78.95
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	91.4	78.34
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	91.4	78.34
HORVU1Hr1G028820.1	Barley	mitochondrion	85.48	77.18
CDY26360	Canola	plastid	91.4	74.89
CDX87764	Canola	mitochondrion	90.86	74.12
EES00248	Sorghum	cytosol, plastid, vacuole	19.35	73.47
CDX71934	Canola	cytosol	91.4	66.67
CDY49245	Canola	cytosol	91.4	65.64
VIT_03s0017g00140.t01	Wine grape	cytosol	34.41	63.37
VIT_19s0014g02400.t01	Wine grape	cytosol	36.02	63.21
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	31.72	61.46
VIT_17s0053g00180.t01	Wine grape	cytosol	28.49	43.8

Protein Annotations

EntrezGene:100251464	wikigene:100251464	MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	ProteinID:CCB55697	ProteinID:CCB55697.1
UniProt:F6HMA9	EMBL:FN595992	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR022803	EntrezGene:LOC100251464	wikigene:LOC100251464	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161
ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS
InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	TIGR:TC53025	UniParc:UPI0002108258	ArrayExpress:VIT_10s0003g01520
EnsemblPlantsGene:VIT_10s0003g01520	EnsemblPlants:VIT_10s0003g01520.t01	unigene:Vvi.6976	RefSeq:XP_002270266	RefSeq:XP_002270266.1	SEG:seg

Description

No Description!

Coordinates

chr10:+:2923176..2925451

Molecular Weight (calculated)

21247.8 Da

IEP (calculated)

10.426

GRAVY (calculated)

-0.477

Length

186 amino acids

Sequence
(BLAST)

001: MENQASERKL ANPMRDIKVQ KLVLNISVGE SGDRLTRAAK VLEQLSGQSP VFSKARYTVR SFAIRRNEKI ACYVTVRGEK AMQLLESGLK VKEYELLRRN
101: FSDTGCFGFG IQEHIDLGIK YDPSTGIYGM DFYVVLERPG YRVGRRRRCK ARVGPHHRVT KDDAMKWFQV KYEGVILNKA QNIVGS

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.