Factsheet for Os05t0207300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19502382
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0205500-01	Rice	nucleus	99.45	99.45
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	98.9	98.9
PGSC0003DMT400067873	Potato	cytosol	93.96	94.48
PGSC0003DMT400052643	Potato	cytosol	93.96	94.48
PGSC0003DMT400027379	Potato	cytosol	93.96	94.48
PGSC0003DMT400020315	Potato	cytosol	93.96	94.48
Solyc02g086240.2.1	Tomato	cytosol	93.96	94.48
Solyc12g010930.1.1	Tomato	extracellular	93.96	94.48
Solyc10g007980.2.1	Tomato	cytosol	93.96	94.48
Solyc07g055230.2.1	Tomato	cytosol	93.96	94.48
AT3G58700.1	Thale cress	cytosol	93.96	93.96
AT2G42740.1	Thale cress	cytosol	93.96	93.96
AT5G45775.2	Thale cress	cytosol	93.96	93.96
AT4G18730.1	Thale cress	cytosol	93.96	93.96
KRH62493	Soybean	endoplasmic reticulum, nucleus	93.41	93.92
KRH13277	Soybean	cytosol	93.41	93.92
KRH25821	Soybean	cytosol	93.41	93.92
KRH55687	Soybean	nucleus	93.41	93.92
KRH55704	Soybean	cytosol	93.41	93.92
KRH56423	Soybean	cytosol	93.41	93.92
CDY23103	Canola	cytosol	88.46	93.6
CDX77611	Canola	cytosol	88.46	93.6
CDX78887	Canola	cytosol	88.46	93.6
CDY00582	Canola	cytosol	88.46	93.6
CDY62552	Canola	cytosol	88.46	93.6
CDY60533	Canola	cytosol	88.46	93.6
CDY39447	Canola	cytosol	88.46	93.6
Bra025058.1-P	Field mustard	cytosol	93.41	93.41
Bra021990.1-P	Field mustard	cytosol	93.41	93.41
Bra013342.1-P	Field mustard	cytosol	93.41	93.41
Bra012580.1-P	Field mustard	cytosol	93.41	93.41
KRH25819	Soybean	nucleus	92.86	93.37
CDY64920	Canola	cytosol	92.86	92.35
TraesCS1B01G144300.1	Wheat	cytosol	85.16	92.26
VIT_12s0028g01800.t01	Wine grape	cytosol	87.36	91.91
CDX99436	Canola	cytosol, extracellular	92.86	91.85
TraesCS1A01G125100.1	Wheat	nucleus	90.66	91.67
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	90.66	91.67
TraesCS3A01G136800.1	Wheat	cytosol	90.66	91.67
GSMUA_Achr1P20570_001	Banana	cytosol	18.13	91.67
TraesCS3B01G154600.1	Wheat	cytosol	90.66	91.67
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	90.66	91.67
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	90.11	91.11
Os06t0550000-00	Rice	plastid	99.45	90.95
KRH62765	Soybean	cytosol	51.1	90.29
VIT_10s0003g01520.t01	Wine grape	cytosol	90.11	88.17
Bra017591.1-P	Field mustard	cytosol	83.52	85.39
CDX98322	Canola	cytosol	67.58	84.83
KRH56320	Soybean	cytosol, nucleus	88.46	80.9
HORVU1Hr1G028820.1	Barley	mitochondrion	90.11	79.61
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	93.41	78.34
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	93.41	78.34
KRH16362	Soybean	mitochondrion	36.81	75.28
CDY26360	Canola	plastid	93.41	74.89
CDX87764	Canola	mitochondrion	92.86	74.12
Solyc04g080150.1.1	Tomato	unclear	37.36	69.39
CDX71934	Canola	cytosol	93.41	66.67
CDY49245	Canola	cytosol	93.41	65.64
VIT_03s0017g00140.t01	Wine grape	cytosol	35.16	63.37
VIT_19s0014g02400.t01	Wine grape	cytosol	36.81	63.21
GSMUA_Achr1P20580_001	Banana	cytosol	15.93	59.18
VIT_17s0053g00180.t01	Wine grape	cytosol	29.12	43.8
KRH12095	Soybean	cytosol, plastid, vacuole	9.34	11.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EntrezGene:4338077	EntrezGene:4341262	ProteinID:AAU90185.1	EMBL:AK070605
ProteinID:BAF16813.1	ProteinID:BAF19748.2	ProteinID:BAS92760.1	ProteinID:EEE62702.1	ProteinID:EEE65858.1	GO:GO:0000027
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0022625	InterPro:IPR022803	EnsemblPlantsGene:Os05g0207300
EnsemblPlants:Os05t0207300-01	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994
PANTHER:PTHR11994:SF15	UniProt:Q0DK10	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N
InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI000044476C	RefSeq:XP_015640554.1	RefSeq:XP_015641087.1	SEG:seg

Description

RPL11Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2. (Os05t0207300-01)

Coordinates

chr5:+:6649558..6651815

Molecular Weight (calculated)

20837.3 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.499

Length

182 amino acids

Sequence
(BLAST)

001: MASEKKQSNP MREIKVQKLV LNISVGESGD RLTRASKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSE
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERAGYRV ARRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKAQAN TS

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.