Factsheet for TraesCS1B01G144300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	99.4	92.78
TraesCS1A01G125100.1	Wheat	nucleus	99.4	92.78
TraesCS3B01G154600.1	Wheat	cytosol	98.81	92.22
KRH62765	Soybean	cytosol	55.36	90.29
CDY00582	Canola	cytosol	91.07	88.95
CDY23103	Canola	cytosol	91.07	88.95
CDY60533	Canola	cytosol	91.07	88.95
CDX77611	Canola	cytosol	91.07	88.95
VIT_12s0028g01800.t01	Wine grape	cytosol	91.07	88.44
CDY39447	Canola	cytosol	90.48	88.37
CDY62552	Canola	cytosol	90.48	88.37
CDX78887	Canola	cytosol	90.48	88.37
KRH62493	Soybean	endoplasmic reticulum, nucleus	92.86	86.19
KRH25821	Soybean	cytosol	92.86	86.19
KRH56423	Soybean	cytosol	92.86	86.19
KRH55704	Soybean	cytosol	92.86	86.19
KRH13277	Soybean	cytosol	92.86	86.19
KRH55687	Soybean	nucleus	92.86	86.19
GSMUA_Achr1P20570_001	Banana	cytosol	18.45	86.11
KXG29884	Sorghum	cytosol	92.86	85.71
EES04818	Sorghum	cytosol	92.86	85.71
EES04817	Sorghum	cytosol	92.86	85.71
KRH25819	Soybean	nucleus	92.26	85.64
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	92.26	85.16
Os05t0207300-01	Rice	plasma membrane	92.26	85.16
PGSC0003DMT400067873	Potato	cytosol	91.67	85.08
PGSC0003DMT400052643	Potato	cytosol	91.67	85.08
PGSC0003DMT400027379	Potato	cytosol	91.67	85.08
PGSC0003DMT400020315	Potato	cytosol	91.67	85.08
Solyc02g086240.2.1	Tomato	cytosol	91.67	85.08
Solyc07g055230.2.1	Tomato	cytosol	91.67	85.08
Solyc10g007980.2.1	Tomato	cytosol	91.67	85.08
Solyc12g010930.1.1	Tomato	extracellular	91.67	85.08
AT2G42740.1	Thale cress	cytosol	91.67	84.62
AT3G58700.1	Thale cress	cytosol	91.07	84.07
AT4G18730.1	Thale cress	cytosol	91.07	84.07
AT5G45775.2	Thale cress	cytosol	91.07	84.07
Bra021990.1-P	Field mustard	cytosol	91.07	84.07
Bra012580.1-P	Field mustard	cytosol	90.48	83.52
Bra013342.1-P	Field mustard	cytosol	90.48	83.52
Bra025058.1-P	Field mustard	cytosol	90.48	83.52
CDY64920	Canola	cytosol	90.48	83.06
Zm00001d053547_P003	Maize	plastid	92.26	82.89
VIT_10s0003g01520.t01	Wine grape	cytosol	91.67	82.8
CDX99436	Canola	cytosol, extracellular	90.48	82.61
Bra017591.1-P	Field mustard	cytosol	86.31	81.46
HORVU1Hr1G028820.1	Barley	mitochondrion	99.4	81.07
CDX98322	Canola	cytosol	69.64	80.69
KRH16362	Soybean	mitochondrion	40.48	76.4
KRH56320	Soybean	cytosol, nucleus	86.31	72.86
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	91.07	70.51
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	91.07	70.51
Solyc04g080150.1.1	Tomato	unclear	39.88	68.37
CDY26360	Canola	plastid	91.07	67.4
CDX87764	Canola	mitochondrion	90.48	66.67
CDX71934	Canola	cytosol	91.07	60.0
CDY49245	Canola	cytosol	91.07	59.07
GSMUA_Achr1P20580_001	Banana	cytosol	16.07	55.1
VIT_19s0014g02400.t01	Wine grape	cytosol	33.33	52.83
VIT_03s0017g00140.t01	Wine grape	cytosol	31.55	52.48
VIT_17s0053g00180.t01	Wine grape	cytosol	25.6	35.54
KRH12095	Soybean	cytosol, plastid, vacuole	10.71	12.0

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR022803	PFAM:PF00281
PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5
InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	EnsemblPlantsGene:TraesCS1B01G144300
EnsemblPlants:TraesCS1B01G144300.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:196140568..196142927

Molecular Weight (calculated)

19246.5 Da

IEP (calculated)

10.518

GRAVY (calculated)

-0.349

Length

168 amino acids

Sequence
(BLAST)

001: MIKVQKLVLN ISVGESGDRL TRAAKVLEQL SGQSPVFSKA RYTVRSFGIR RNEKIACYVT IRGEKAMQLL ESGLKVKEYE LLRRNFSDTG CFGFGIQEHI
101: DLGMKYDPST GIYGMDFFVV LERAGYRVSR RRRCKARVGI HQRVTKEDAM KWFQVKYEGV ILNKSHAS

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.