Factsheet for Solyc12g010930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 28847647
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020315	Potato	cytosol	100.0	100.0
Solyc02g086240.2.1	Tomato	cytosol	100.0	100.0
Solyc07g055230.2.1	Tomato	cytosol	100.0	100.0
Solyc10g007980.2.1	Tomato	cytosol	100.0	100.0
AT3G58700.1	Thale cress	cytosol	95.58	95.05
AT2G42740.1	Thale cress	cytosol	95.58	95.05
AT5G45775.2	Thale cress	cytosol	95.58	95.05
AT4G18730.1	Thale cress	cytosol	95.58	95.05
Bra012580.1-P	Field mustard	cytosol	95.03	94.51
Bra021990.1-P	Field mustard	cytosol	95.03	94.51
Bra025058.1-P	Field mustard	cytosol	95.03	94.51
KXG31594	Sorghum	cytosol	95.03	94.51
Bra013342.1-P	Field mustard	cytosol	95.03	94.51
KRH13277	Soybean	cytosol	94.48	94.48
KRH25821	Soybean	cytosol	94.48	94.48
KRH55687	Soybean	nucleus	94.48	94.48
KRH62493	Soybean	endoplasmic reticulum, nucleus	94.48	94.48
KRH56423	Soybean	cytosol	94.48	94.48
KRH55704	Soybean	cytosol	94.48	94.48
CDY00582	Canola	cytosol	89.5	94.19
CDY62552	Canola	cytosol	89.5	94.19
CDY60533	Canola	cytosol	89.5	94.19
CDY39447	Canola	cytosol	89.5	94.19
CDY23103	Canola	cytosol	89.5	94.19
CDX78887	Canola	cytosol	89.5	94.19
CDX77611	Canola	cytosol	89.5	94.19
Os05t0207300-01	Rice	plasma membrane	94.48	93.96
KRH25819	Soybean	nucleus	93.92	93.92
VIT_12s0028g01800.t01	Wine grape	cytosol	89.5	93.64
CDY64920	Canola	cytosol	94.48	93.44
Os01t0205500-01	Rice	nucleus	93.92	93.41
KXG29884	Sorghum	cytosol	93.92	93.41
EES04817	Sorghum	cytosol	93.92	93.41
EES04818	Sorghum	cytosol	93.92	93.41
CDX99436	Canola	cytosol, extracellular	94.48	92.93
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	93.37	92.86
TraesCS1B01G144300.1	Wheat	cytosol	85.08	91.67
TraesCS1A01G125100.1	Wheat	nucleus	89.5	90.0
TraesCS3A01G136800.1	Wheat	cytosol	89.5	90.0
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	89.5	90.0
TraesCS3B01G154600.1	Wheat	cytosol	89.5	90.0
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	89.5	90.0
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	88.95	89.44
KRH62765	Soybean	cytosol	50.83	89.32
EES17871	Sorghum	cytosol	38.12	88.46
Bra017591.1-P	Field mustard	cytosol	84.53	85.96
CDX98322	Canola	cytosol	68.51	85.52
Os06t0550000-00	Rice	plastid	93.92	85.43
KXG20149	Sorghum	cytosol	90.06	84.9
GSMUA_Achr9P28800_001	Banana	cytosol	14.36	83.87
HORVU0Hr1G003140.1	Barley	mitochondrion	33.7	83.56
HORVU1Hr1G032650.1	Barley	mitochondrion	40.88	81.32
KRH56320	Soybean	cytosol, nucleus	88.4	80.4
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
HORVU7Hr1G044560.1	Barley	mitochondrion	41.44	78.95
HORVU1Hr1G028820.1	Barley	mitochondrion	88.95	78.16
CDY26360	Canola	plastid	95.03	75.77
Solyc04g080150.1.1	Tomato	unclear	40.88	75.51
EES00248	Sorghum	cytosol, plastid, vacuole	20.44	75.51
KRH16362	Soybean	mitochondrion	37.02	75.28
CDX87764	Canola	mitochondrion	94.48	75.0
CDX71934	Canola	cytosol	95.03	67.45
CDY49245	Canola	cytosol	95.03	66.41
VIT_03s0017g00140.t01	Wine grape	cytosol	36.46	65.35
VIT_19s0014g02400.t01	Wine grape	cytosol	38.12	65.09
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	33.15	62.5
VIT_17s0053g00180.t01	Wine grape	cytosol	30.94	46.28
KRH12095	Soybean	cytosol, plastid, vacuole	9.39	11.33
Zm00001d000159_P001	Maize	cytosol	1.66	6.25

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR022803	UniProt:K4CG62	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358
PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N
InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	EnsemblPlantsGene:Solyc12g010930.1	EnsemblPlants:Solyc12g010930.1.1	UniParc:UPI00005DB2C2	SEG:seg

Description

No Description!

Coordinates

chr12:+:3818534..3820142

Molecular Weight (calculated)

20791.3 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.476

Length

181 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSE
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKSRV GIQHRVTKED SMKWFQVKYE GVILNKSSNI Q

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.