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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • plastid 2
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH13277 Soybean cytosol 100.0 100.0
KRH56423 Soybean cytosol 100.0 100.0
KRH55704 Soybean cytosol 100.0 100.0
KRH25821 Soybean cytosol 100.0 100.0
KRH55687 Soybean nucleus 99.45 99.45
KRH25819 Soybean nucleus 98.89 98.89
KRH62765 Soybean cytosol 54.7 96.12
Bra012580.1-P Field mustard cytosol 95.58 95.05
Bra013342.1-P Field mustard cytosol 95.58 95.05
Bra021990.1-P Field mustard cytosol 95.58 95.05
Bra025058.1-P Field mustard cytosol 95.58 95.05
VIT_12s0028g01800.t01 Wine grape cytosol 90.61 94.8
CDX78887 Canola cytosol 90.06 94.77
CDX77611 Canola cytosol 90.06 94.77
CDY62552 Canola cytosol 90.06 94.77
CDY00582 Canola cytosol 90.06 94.77
CDY23103 Canola cytosol 90.06 94.77
CDY60533 Canola cytosol 90.06 94.77
CDY39447 Canola cytosol 90.06 94.77
Os02t0235600-01 Rice cytosol, golgi, nucleus, plasma membrane 95.03 94.51
AT3G58700.1 Thale cress cytosol 95.03 94.51
AT5G45775.2 Thale cress cytosol 95.03 94.51
AT2G42740.1 Thale cress cytosol 95.03 94.51
AT4G18730.1 Thale cress cytosol 95.03 94.51
Solyc12g010930.1.1 Tomato extracellular 94.48 94.48
Solyc10g007980.2.1 Tomato cytosol 94.48 94.48
Solyc07g055230.2.1 Tomato cytosol 94.48 94.48
Solyc02g086240.2.1 Tomato cytosol 94.48 94.48
PGSC0003DMT400067873 Potato cytosol 94.48 94.48
PGSC0003DMT400052643 Potato cytosol 94.48 94.48
PGSC0003DMT400027379 Potato cytosol 94.48 94.48
PGSC0003DMT400020315 Potato cytosol 94.48 94.48
CDY64920 Canola cytosol 95.03 93.99
EES04817 Sorghum cytosol 94.48 93.96
EES04818 Sorghum cytosol 94.48 93.96
KXG31594 Sorghum cytosol 94.48 93.96
KXG29884 Sorghum cytosol 94.48 93.96
CDX99436 Canola cytosol, extracellular 95.03 93.48
Os05t0207300-01 Rice plasma membrane 93.92 93.41
Os01t0205500-01 Rice nucleus 93.37 92.86
TraesCS1B01G144300.1 Wheat cytosol 86.19 92.86
TraesCS1A01G125100.1 Wheat nucleus 91.16 91.67
TraesCS1D01G128800.1 Wheat cytosol, golgi, unclear 90.61 91.11
TraesCS3D01G137600.1 Wheat cytosol, extracellular, golgi 90.06 90.56
HORVU3Hr1G026060.1 Barley cytosol, plasma membrane 90.06 90.56
TraesCS3A01G136800.1 Wheat cytosol 90.06 90.56
TraesCS3B01G154600.1 Wheat cytosol 90.06 90.56
EES17871 Sorghum cytosol 38.67 89.74
Bra017591.1-P Field mustard cytosol 85.08 86.52
CDX98322 Canola cytosol 69.06 86.21
Os06t0550000-00 Rice plastid 93.37 84.92
KXG20149 Sorghum cytosol 89.5 84.38
KRH56320 Soybean cytosol, nucleus 92.27 83.92
HORVU0Hr1G003140.1 Barley mitochondrion 33.15 82.19
HORVU1Hr1G032650.1 Barley mitochondrion 40.33 80.22
KRH16362 Soybean mitochondrion 39.23 79.78
Bra014558.1-P Field mustard endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 95.58 79.72
CDX88999 Canola endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 95.58 79.72
HORVU1Hr1G028820.1 Barley mitochondrion 90.61 79.61
HORVU7Hr1G044560.1 Barley mitochondrion 40.88 77.89
CDY26360 Canola plastid 95.58 76.21
CDX87764 Canola mitochondrion 95.03 75.44
EES00248 Sorghum cytosol, plastid, vacuole 19.89 73.47
Solyc04g080150.1.1 Tomato unclear 38.12 70.41
CDX71934 Canola cytosol 95.58 67.84
CDY49245 Canola cytosol 95.58 66.8
HORVU7Hr1G062960.1 Barley cytosol, mitochondrion, plastid 32.04 60.42
KRH12095 Soybean cytosol, plastid, vacuole 9.94 12.0
Protein Annotations
EntrezGene:100499863EntrezGene:100791687EntrezGene:100810082EntrezGene:100818410EntrezGene:100819731MapMan:17.1.2.1.11
Gene3D:3.30.1440.10EMBL:ACUP02002297EMBL:ACUP02004046EMBL:ACUP02004115EMBL:ACUP02007344EMBL:ACUP02009680
EMBL:BT089882EMBL:BT099447UniProt:C6SXI7EnsemblPlantsGene:GLYMA_04G111500GO:GO:0000027GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0019538
GO:GO:0022625GO:GO:0030529InterPro:IPR022803ProteinID:KRH13277.1ProteinID:KRH25821.1ProteinID:KRH55704.1
ProteinID:KRH56423.1EnsemblPlants:KRH62493ProteinID:KRH62493ProteinID:KRH62493.1PFAM:PF00281PFAM:PF00673
PIRSF:PIRSF002161ScanProsite:PS00358PANTHER:PTHR11994PANTHER:PTHR11994:SF15InterPro:Ribosomal_L5InterPro:Ribosomal_L5_C
InterPro:Ribosomal_L5_CSInterPro:Ribosomal_L5_NInterPro:Ribosomal_L5_dom_sfSUPFAM:SSF55282UniParc:UPI0001B1535FSEG:seg
Description
hypothetical protein
Coordinates
chr4:+:12380778..12383075
Molecular Weight (calculated)
20714.4 Da
IEP (calculated)
10.543
GRAVY (calculated)
-0.393
Length
181 amino acids
Sequence
(BLAST)
001: MASEKKLSNP MREIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGDKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFF VVLERPGYRV GRRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKSQAI V
Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)
001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG
Arabidopsis Description
RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.