CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13277	Soybean	cytosol	98.89	98.89
KRH25821	Soybean	cytosol	98.89	98.89
KRH62493	Soybean	endoplasmic reticulum, nucleus	98.89	98.89
KRH56423	Soybean	cytosol	98.89	98.89
KRH55704	Soybean	cytosol	98.89	98.89
KRH55687	Soybean	nucleus	98.34	98.34
KRH62765	Soybean	cytosol	54.14	95.15
Bra012580.1-P	Field mustard	cytosol	95.03	94.51
Bra013342.1-P	Field mustard	cytosol	95.03	94.51
Bra021990.1-P	Field mustard	cytosol	95.03	94.51
Bra025058.1-P	Field mustard	cytosol	95.03	94.51
VIT_12s0028g01800.t01	Wine grape	cytosol	90.06	94.22
CDX78887	Canola	cytosol	89.5	94.19
CDX77611	Canola	cytosol	89.5	94.19
CDY62552	Canola	cytosol	89.5	94.19
CDY00582	Canola	cytosol	89.5	94.19
CDY23103	Canola	cytosol	89.5	94.19
CDY60533	Canola	cytosol	89.5	94.19
CDY39447	Canola	cytosol	89.5	94.19
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	94.48	93.96
AT3G58700.1	Thale cress	cytosol	94.48	93.96
AT5G45775.2	Thale cress	cytosol	94.48	93.96
AT2G42740.1	Thale cress	cytosol	94.48	93.96
AT4G18730.1	Thale cress	cytosol	94.48	93.96
Solyc12g010930.1.1	Tomato	extracellular	93.92	93.92
Solyc10g007980.2.1	Tomato	cytosol	93.92	93.92
Solyc07g055230.2.1	Tomato	cytosol	93.92	93.92
Solyc02g086240.2.1	Tomato	cytosol	93.92	93.92
PGSC0003DMT400067873	Potato	cytosol	93.92	93.92
PGSC0003DMT400052643	Potato	cytosol	93.92	93.92
PGSC0003DMT400027379	Potato	cytosol	93.92	93.92
PGSC0003DMT400020315	Potato	cytosol	93.92	93.92
CDY64920	Canola	cytosol	94.48	93.44
EES04817	Sorghum	cytosol	93.92	93.41
EES04818	Sorghum	cytosol	93.92	93.41
KXG31594	Sorghum	cytosol	93.92	93.41
KXG29884	Sorghum	cytosol	93.92	93.41
CDX99436	Canola	cytosol, extracellular	94.48	92.93
Os05t0207300-01	Rice	plasma membrane	93.37	92.86
Os01t0205500-01	Rice	nucleus	92.82	92.31
TraesCS1B01G144300.1	Wheat	cytosol	85.64	92.26
TraesCS1A01G125100.1	Wheat	nucleus	90.61	91.11
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	90.06	90.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	89.5	90.0
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	89.5	90.0
TraesCS3A01G136800.1	Wheat	cytosol	89.5	90.0
TraesCS3B01G154600.1	Wheat	cytosol	89.5	90.0
EES17871	Sorghum	cytosol	38.67	89.74
Bra017591.1-P	Field mustard	cytosol	84.53	85.96
CDX98322	Canola	cytosol	68.51	85.52
Os06t0550000-00	Rice	plastid	92.82	84.42
KXG20149	Sorghum	cytosol	88.95	83.85
KRH56320	Soybean	cytosol, nucleus	91.71	83.42
HORVU0Hr1G003140.1	Barley	mitochondrion	33.15	82.19
HORVU1Hr1G032650.1	Barley	mitochondrion	40.33	80.22
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
HORVU1Hr1G028820.1	Barley	mitochondrion	90.06	79.13
KRH16362	Soybean	mitochondrion	38.67	78.65
HORVU7Hr1G044560.1	Barley	mitochondrion	40.88	77.89
CDY26360	Canola	plastid	95.03	75.77
CDX87764	Canola	mitochondrion	94.48	75.0
EES00248	Sorghum	cytosol, plastid, vacuole	19.89	73.47
Solyc04g080150.1.1	Tomato	unclear	38.12	70.41
CDX71934	Canola	cytosol	95.03	67.45
CDY49245	Canola	cytosol	95.03	66.41
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	32.04	60.42
KRH12095	Soybean	cytosol, plastid, vacuole	9.94	12.0

Protein Annotations

EntrezGene:100812386	MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	UniProt:A0A0R0HFE2	EMBL:ACUP02007344	EnsemblPlantsGene:GLYMA_12G131600
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR022803	EnsemblPlants:KRH25819
ProteinID:KRH25819	ProteinID:KRH25819.1	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358
PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N
InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0006ED5DD3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:14881258..14883462

Molecular Weight (calculated)

20780.4 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.415

Length

181 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MREMKVQKLV LNISVGESGD RLTRAAKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGDKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFF VVLERPGYRV GRRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKSQAI F

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.