Factsheet for AT2G42740.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G18730.1	Thale cress	cytosol	99.45	99.45
AT5G45775.2	Thale cress	cytosol	99.45	99.45
AT3G58700.1	Thale cress	cytosol	99.45	99.45
CDY00582	Canola	cytosol	93.96	99.42
Solyc07g055230.2.1	Tomato	cytosol	95.05	95.58
Solyc02g086240.2.1	Tomato	cytosol	95.05	95.58
PGSC0003DMT400067873	Potato	cytosol	95.05	95.58
PGSC0003DMT400052643	Potato	cytosol	95.05	95.58
PGSC0003DMT400027379	Potato	cytosol	95.05	95.58
PGSC0003DMT400020315	Potato	cytosol	95.05	95.58
Solyc10g007980.2.1	Tomato	cytosol	95.05	95.58
Solyc12g010930.1.1	Tomato	extracellular	95.05	95.58
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	95.05	95.05
KRH62493	Soybean	endoplasmic reticulum, nucleus	94.51	95.03
KRH56423	Soybean	cytosol	94.51	95.03
KRH13277	Soybean	cytosol	94.51	95.03
KRH25821	Soybean	cytosol	94.51	95.03
KRH55704	Soybean	cytosol	94.51	95.03
KXG29884	Sorghum	cytosol	94.51	94.51
EES04818	Sorghum	cytosol	94.51	94.51
EES04817	Sorghum	cytosol	94.51	94.51
KRH25819	Soybean	nucleus	93.96	94.48
KRH55687	Soybean	nucleus	93.96	94.48
Os05t0207300-01	Rice	plasma membrane	93.96	93.96
Os01t0205500-01	Rice	nucleus	93.41	93.41
KXG31594	Sorghum	cytosol	93.41	93.41
KRH62765	Soybean	cytosol	52.2	92.23
VIT_10s0003g01520.t01	Wine grape	cytosol	93.96	91.94
TraesCS1B01G144300.1	Wheat	cytosol	84.62	91.67
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	90.11	91.11
TraesCS3A01G136800.1	Wheat	cytosol	90.11	91.11
TraesCS3B01G154600.1	Wheat	cytosol	90.11	91.11
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	90.11	91.11
TraesCS1A01G125100.1	Wheat	nucleus	89.01	90.0
CDX98322	Canola	cytosol	71.43	89.66
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	88.46	89.44
EES17871	Sorghum	cytosol	37.91	88.46
Os06t0550000-00	Rice	plastid	93.41	85.43
HORVU0Hr1G003140.1	Barley	mitochondrion	34.07	84.93
KXG20149	Sorghum	cytosol	88.46	83.85
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	99.45	83.41
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	99.45	83.41
HORVU1Hr1G032650.1	Barley	mitochondrion	41.21	82.42
KRH56320	Soybean	cytosol, nucleus	89.01	81.41
GSMUA_Achr9P28800_001	Banana	cytosol	13.74	80.65
HORVU7Hr1G044560.1	Barley	mitochondrion	41.76	80.0
HORVU1Hr1G028820.1	Barley	mitochondrion	88.46	78.16
KRH16362	Soybean	mitochondrion	37.91	77.53
EES00248	Sorghum	cytosol, plastid, vacuole	19.78	73.47
CDX71934	Canola	cytosol	99.45	70.98
Solyc04g080150.1.1	Tomato	unclear	37.91	70.41
CDY49245	Canola	cytosol	99.45	69.88
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	32.97	62.5
KRH12095	Soybean	cytosol, plastid, vacuole	8.79	10.67
Zm00001d000159_P001	Maize	cytosol	2.2	8.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EntrezGene:818874	UniProt:A0A178VWL0	ProteinID:AAD21733.1	ProteinID:AEC10163.1
EMBL:AK228536	ArrayExpress:AT2G42740	EnsemblPlantsGene:AT2G42740	RefSeq:AT2G42740	TAIR:AT2G42740	RefSeq:AT2G42740-TAIR-G
EnsemblPlants:AT2G42740.1	TAIR:AT2G42740.1	EMBL:AY074636	ProteinID:CAA57395.1	GO:GO:0000027	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005773
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0019843	GO:GO:0022625	GO:GO:0030529	InterPro:IPR022803	RefSeq:NP_850376.2	ProteinID:OAP10234.1
UniProt:P42795	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000282	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0009066	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020124	PO:PO:0020137
PO:PO:0025022	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	UniProt:Q0WQZ1	Symbol:RPL16A
InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282
UniParc:UPI0000132EBA	SEG:seg	:	:	:	:

Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]

Coordinates

chr2:+:17791692..17793142

Molecular Weight (calculated)

20832.4 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.460

Length

182 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.