CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13277	Soybean	cytosol	99.45	99.45
KRH25821	Soybean	cytosol	99.45	99.45
KRH55704	Soybean	cytosol	99.45	99.45
KRH56423	Soybean	cytosol	99.45	99.45
KRH62493	Soybean	endoplasmic reticulum, nucleus	99.45	99.45
KRH25819	Soybean	nucleus	98.34	98.34
KRH62765	Soybean	cytosol	54.7	96.12
Bra012580.1-P	Field mustard	cytosol	95.03	94.51
Bra013342.1-P	Field mustard	cytosol	95.03	94.51
Bra021990.1-P	Field mustard	cytosol	95.03	94.51
Bra025058.1-P	Field mustard	cytosol	95.03	94.51
PGSC0003DMT400020315	Potato	cytosol	94.48	94.48
PGSC0003DMT400027379	Potato	cytosol	94.48	94.48
Solyc12g010930.1.1	Tomato	extracellular	94.48	94.48
Solyc10g007980.2.1	Tomato	cytosol	94.48	94.48
Solyc07g055230.2.1	Tomato	cytosol	94.48	94.48
Solyc02g086240.2.1	Tomato	cytosol	94.48	94.48
PGSC0003DMT400067873	Potato	cytosol	94.48	94.48
PGSC0003DMT400052643	Potato	cytosol	94.48	94.48
VIT_12s0028g01800.t01	Wine grape	cytosol	90.06	94.22
CDX77611	Canola	cytosol	89.5	94.19
CDY62552	Canola	cytosol	89.5	94.19
CDY60533	Canola	cytosol	89.5	94.19
CDY39447	Canola	cytosol	89.5	94.19
CDY23103	Canola	cytosol	89.5	94.19
CDY00582	Canola	cytosol	89.5	94.19
CDX78887	Canola	cytosol	89.5	94.19
KXG31594	Sorghum	cytosol	94.48	93.96
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	94.48	93.96
AT3G58700.1	Thale cress	cytosol	94.48	93.96
AT2G42740.1	Thale cress	cytosol	94.48	93.96
AT4G18730.1	Thale cress	cytosol	94.48	93.96
AT5G45775.2	Thale cress	cytosol	94.48	93.96
CDY64920	Canola	cytosol	94.48	93.44
Os05t0207300-01	Rice	plasma membrane	93.92	93.41
KXG29884	Sorghum	cytosol	93.92	93.41
EES04817	Sorghum	cytosol	93.92	93.41
EES04818	Sorghum	cytosol	93.92	93.41
CDX99436	Canola	cytosol, extracellular	94.48	92.93
TraesCS1B01G144300.1	Wheat	cytosol	86.19	92.86
Os01t0205500-01	Rice	nucleus	93.37	92.86
TraesCS1A01G125100.1	Wheat	nucleus	91.16	91.67
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	90.61	91.11
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	90.06	90.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	90.06	90.56
TraesCS3B01G154600.1	Wheat	cytosol	90.06	90.56
TraesCS3A01G136800.1	Wheat	cytosol	90.06	90.56
EES17871	Sorghum	cytosol	38.67	89.74
Bra017591.1-P	Field mustard	cytosol	84.53	85.96
CDX98322	Canola	cytosol	68.51	85.52
Os06t0550000-00	Rice	plastid	93.37	84.92
KXG20149	Sorghum	cytosol	89.5	84.38
KRH56320	Soybean	cytosol, nucleus	91.71	83.42
HORVU0Hr1G003140.1	Barley	mitochondrion	33.15	82.19
HORVU1Hr1G032650.1	Barley	mitochondrion	40.33	80.22
KRH16362	Soybean	mitochondrion	39.23	79.78
HORVU1Hr1G028820.1	Barley	mitochondrion	90.61	79.61
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
HORVU7Hr1G044560.1	Barley	mitochondrion	40.88	77.89
CDY26360	Canola	plastid	95.03	75.77
CDX87764	Canola	mitochondrion	94.48	75.0
EES00248	Sorghum	cytosol, plastid, vacuole	19.89	73.47
Solyc04g080150.1.1	Tomato	unclear	38.12	70.41
CDX71934	Canola	cytosol	95.03	67.45
CDY49245	Canola	cytosol	95.03	66.41
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	32.04	60.42
KRH12095	Soybean	cytosol, plastid, vacuole	9.94	12.0

Protein Annotations

EntrezGene:100305912	MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EMBL:ACUP02004039	EMBL:BT089744	UniProt:C6SX50
EnsemblPlantsGene:GLYMA_06G272500	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR022803
EnsemblPlants:KRH55687	ProteinID:KRH55687	ProteinID:KRH55687.1	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161
ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS
InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0001B151F6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:46322722..46325157

Molecular Weight (calculated)

20684.3 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.380

Length

181 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MREIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQAPVFS KARYTVRSFG IRRNEKIACY VTVRGDKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFF VVLERPGYRV GRRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKSQAI V

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.