CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G003140.1	Barley	mitochondrion	42.07	83.56
GSMUA_Achr9P28800_001	Banana	cytosol	17.24	80.65
HORVU1Hr1G032650.1	Barley	mitochondrion	50.34	80.22
HORVU7Hr1G044560.1	Barley	mitochondrion	51.03	77.89
CDY39447	Canola	cytosol	90.34	76.16
CDY62552	Canola	cytosol	90.34	76.16
CDY60533	Canola	cytosol	90.34	76.16
CDY23103	Canola	cytosol	90.34	76.16
CDY00582	Canola	cytosol	90.34	76.16
CDX78887	Canola	cytosol	90.34	76.16
CDX77611	Canola	cytosol	90.34	76.16
KRH16362	Soybean	mitochondrion	44.83	73.03
CDY64920	Canola	cytosol	90.34	71.58
AT2G42740.1	Thale cress	cytosol	89.66	71.43
EES00248	Sorghum	cytosol, plastid, vacuole	24.14	71.43
AT3G58700.1	Thale cress	cytosol	89.66	71.43
CDX99436	Canola	cytosol, extracellular	90.34	71.2
TraesCS1B01G144300.1	Wheat	cytosol	80.69	69.64
KRH55704	Soybean	cytosol	86.21	69.06
KRH25821	Soybean	cytosol	86.21	69.06
KRH56423	Soybean	cytosol	86.21	69.06
KRH62493	Soybean	endoplasmic reticulum, nucleus	86.21	69.06
KRH13277	Soybean	cytosol	86.21	69.06
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	86.21	68.68
Solyc07g055230.2.1	Tomato	cytosol	85.52	68.51
PGSC0003DMT400020315	Potato	cytosol	85.52	68.51
PGSC0003DMT400027379	Potato	cytosol	85.52	68.51
PGSC0003DMT400052643	Potato	cytosol	85.52	68.51
PGSC0003DMT400067873	Potato	cytosol	85.52	68.51
Solyc02g086240.2.1	Tomato	cytosol	85.52	68.51
KRH55687	Soybean	nucleus	85.52	68.51
Solyc10g007980.2.1	Tomato	cytosol	85.52	68.51
KRH25819	Soybean	nucleus	85.52	68.51
Solyc12g010930.1.1	Tomato	extracellular	85.52	68.51
EES04817	Sorghum	cytosol	85.52	68.13
EES04818	Sorghum	cytosol	85.52	68.13
KXG29884	Sorghum	cytosol	85.52	68.13
Os05t0207300-01	Rice	plasma membrane	84.83	67.58
Os01t0205500-01	Rice	nucleus	84.83	67.58
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	83.45	67.22
TraesCS3A01G136800.1	Wheat	cytosol	83.45	67.22
TraesCS3B01G154600.1	Wheat	cytosol	83.45	67.22
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	83.45	67.22
VIT_10s0003g01520.t01	Wine grape	cytosol	86.21	67.2
KXG31594	Sorghum	cytosol	84.14	67.03
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	82.07	66.11
TraesCS1A01G125100.1	Wheat	nucleus	82.07	66.11
Os06t0550000-00	Rice	plastid	84.83	61.81
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	90.34	60.37
KRH56320	Soybean	cytosol, nucleus	82.76	60.3
KXG20149	Sorghum	cytosol	79.31	59.9
Solyc04g080150.1.1	Tomato	unclear	40.0	59.18
HORVU1Hr1G028820.1	Barley	mitochondrion	82.07	57.77
CDY26360	Canola	plastid	90.34	57.71
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	37.93	57.29
CDX87764	Canola	mitochondrion	89.66	57.02
KRH62765	Soybean	cytosol	40.0	56.31
EES17871	Sorghum	cytosol	28.28	52.56
CDX71934	Canola	cytosol	90.34	51.37
CDY49245	Canola	cytosol	90.34	50.58
KRH12095	Soybean	cytosol, plastid, vacuole	10.34	10.0
Zm00001d000159_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:A0A078EBD4	EnsemblPlants:CDX98322	ProteinID:CDX98322	ProteinID:CDX98322.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00105866001	InterPro:IPR022803	PFAM:PF00281	PFAM:PF00673
PIRSF:PIRSF002161	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_N
InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0004EF3FC0	:	:	:

Description

BnaC06g16830D

Coordinates

chrLK031904:+:579875..581836

Molecular Weight (calculated)

16358.0 Da

IEP (calculated)

9.132

GRAVY (calculated)

-0.016

Length

145 amino acids

Sequence
(BLAST)

001: MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KVLSLLCLSA RYTVRSFGIR RNEKIACYVT VRGDKAMQLL ESGLKVKEYE LLRRNFSDTG
101: CFGFVIQEHI DLGIKYDPST GYGLEIMDFY VVLELIINKS QNITG

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.