Factsheet for PGSC0003DMT400020315

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027379	Potato	cytosol	100.0	100.0
PGSC0003DMT400052643	Potato	cytosol	100.0	100.0
PGSC0003DMT400067873	Potato	cytosol	100.0	100.0
Solyc12g010930.1.1	Tomato	extracellular	100.0	100.0
AT3G58700.1	Thale cress	cytosol	95.58	95.05
AT2G42740.1	Thale cress	cytosol	95.58	95.05
AT5G45775.2	Thale cress	cytosol	95.58	95.05
AT4G18730.1	Thale cress	cytosol	95.58	95.05
Bra012580.1-P	Field mustard	cytosol	95.03	94.51
Bra021990.1-P	Field mustard	cytosol	95.03	94.51
Bra025058.1-P	Field mustard	cytosol	95.03	94.51
KXG31594	Sorghum	cytosol	95.03	94.51
Bra013342.1-P	Field mustard	cytosol	95.03	94.51
KRH13277	Soybean	cytosol	94.48	94.48
KRH25821	Soybean	cytosol	94.48	94.48
KRH55687	Soybean	nucleus	94.48	94.48
KRH62493	Soybean	endoplasmic reticulum, nucleus	94.48	94.48
KRH56423	Soybean	cytosol	94.48	94.48
KRH55704	Soybean	cytosol	94.48	94.48
CDY00582	Canola	cytosol	89.5	94.19
CDY62552	Canola	cytosol	89.5	94.19
CDY60533	Canola	cytosol	89.5	94.19
CDY39447	Canola	cytosol	89.5	94.19
CDY23103	Canola	cytosol	89.5	94.19
CDX78887	Canola	cytosol	89.5	94.19
CDX77611	Canola	cytosol	89.5	94.19
Os05t0207300-01	Rice	plasma membrane	94.48	93.96
KRH25819	Soybean	nucleus	93.92	93.92
VIT_12s0028g01800.t01	Wine grape	cytosol	89.5	93.64
CDY64920	Canola	cytosol	94.48	93.44
Os01t0205500-01	Rice	nucleus	93.92	93.41
KXG29884	Sorghum	cytosol	93.92	93.41
EES04817	Sorghum	cytosol	93.92	93.41
EES04818	Sorghum	cytosol	93.92	93.41
CDX99436	Canola	cytosol, extracellular	94.48	92.93
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	93.37	92.86
TraesCS1B01G144300.1	Wheat	cytosol	85.08	91.67
TraesCS1A01G125100.1	Wheat	nucleus	89.5	90.0
TraesCS3A01G136800.1	Wheat	cytosol	89.5	90.0
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	89.5	90.0
TraesCS3B01G154600.1	Wheat	cytosol	89.5	90.0
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	89.5	90.0
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	88.95	89.44
KRH62765	Soybean	cytosol	50.83	89.32
EES17871	Sorghum	cytosol	38.12	88.46
Bra017591.1-P	Field mustard	cytosol	84.53	85.96
CDX98322	Canola	cytosol	68.51	85.52
Os06t0550000-00	Rice	plastid	93.92	85.43
KXG20149	Sorghum	cytosol	90.06	84.9
GSMUA_Achr9P28800_001	Banana	cytosol	14.36	83.87
HORVU0Hr1G003140.1	Barley	mitochondrion	33.7	83.56
HORVU1Hr1G032650.1	Barley	mitochondrion	40.88	81.32
KRH56320	Soybean	cytosol, nucleus	88.4	80.4
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.03	79.26
HORVU7Hr1G044560.1	Barley	mitochondrion	41.44	78.95
HORVU1Hr1G028820.1	Barley	mitochondrion	88.95	78.16
CDY26360	Canola	plastid	95.03	75.77
Solyc04g080150.1.1	Tomato	unclear	40.88	75.51
EES00248	Sorghum	cytosol, plastid, vacuole	20.44	75.51
KRH16362	Soybean	mitochondrion	37.02	75.28
CDX87764	Canola	mitochondrion	94.48	75.0
CDX71934	Canola	cytosol	95.03	67.45
CDY49245	Canola	cytosol	95.03	66.41
VIT_03s0017g00140.t01	Wine grape	cytosol	36.46	65.35
VIT_19s0014g02400.t01	Wine grape	cytosol	38.12	65.09
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	33.15	62.5
VIT_17s0053g00180.t01	Wine grape	cytosol	30.94	46.28
KRH12095	Soybean	cytosol, plastid, vacuole	9.39	11.33
Zm00001d000159_P001	Maize	cytosol	1.66	6.25

Protein Annotations

EntrezGene:102584908	EntrezGene:102584982	EntrezGene:102598285	EntrezGene:102606209	MapMan:17.1.2.1.11	Gene3D:3.30.1440.10
ProteinID:ABB29943	ProteinID:ABB29943.1	ProteinID:ABB86248	ProteinID:ABB86248.1	EMBL:DQ235186	EMBL:DQ284460
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR022803	RefSeq:NP_001274979.1	PFAM:PF00281
PFAM:PF00673	EnsemblPlantsGene:PGSC0003DMG400007855	PGSC:PGSC0003DMG400007855	EnsemblPlants:PGSC0003DMT400020315	PIRSF:PIRSF002161	ScanProsite:PS00358
PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	UniProt:Q307Y8	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS
InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI00005DB2C2	RefSeq:XP_006348888.1	RefSeq:XP_006350023.1
RefSeq:XP_006357834.1	SEG:seg	:	:	:	:

Description

Ribosomal protein L11 [Source:PGSC_GENE;Acc:PGSC0003DMG400007855]

Coordinates

chr12:-:1477909..1479838

Molecular Weight (calculated)

20791.3 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.476

Length

181 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSE
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKSRV GIQHRVTKED SMKWFQVKYE GVILNKSSNI Q

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.