Factsheet for Os01t0205500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19502382
nucleus: 19621931
golgi: 25047511
nucleus: 26035336

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0207300-01	Rice	plasma membrane	99.45	99.45
KXG31594	Sorghum	cytosol	98.9	98.9
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	98.35	98.35
Solyc07g055230.2.1	Tomato	cytosol	93.41	93.92
PGSC0003DMT400020315	Potato	cytosol	93.41	93.92
PGSC0003DMT400027379	Potato	cytosol	93.41	93.92
PGSC0003DMT400052643	Potato	cytosol	93.41	93.92
PGSC0003DMT400067873	Potato	cytosol	93.41	93.92
Solyc02g086240.2.1	Tomato	cytosol	93.41	93.92
Solyc10g007980.2.1	Tomato	cytosol	93.41	93.92
Solyc12g010930.1.1	Tomato	extracellular	93.41	93.92
CDY39447	Canola	cytosol	88.46	93.6
CDX77611	Canola	cytosol	88.46	93.6
CDX78887	Canola	cytosol	88.46	93.6
CDY60533	Canola	cytosol	88.46	93.6
CDY62552	Canola	cytosol	88.46	93.6
CDY00582	Canola	cytosol	88.46	93.6
CDY23103	Canola	cytosol	88.46	93.6
AT3G58700.1	Thale cress	cytosol	93.41	93.41
AT2G42740.1	Thale cress	cytosol	93.41	93.41
AT5G45775.2	Thale cress	cytosol	93.41	93.41
AT4G18730.1	Thale cress	cytosol	93.41	93.41
KRH62493	Soybean	endoplasmic reticulum, nucleus	92.86	93.37
KRH56423	Soybean	cytosol	92.86	93.37
KRH13277	Soybean	cytosol	92.86	93.37
KRH55704	Soybean	cytosol	92.86	93.37
KRH25821	Soybean	cytosol	92.86	93.37
KRH55687	Soybean	nucleus	92.86	93.37
Bra025058.1-P	Field mustard	cytosol	92.86	92.86
Bra021990.1-P	Field mustard	cytosol	92.86	92.86
Bra013342.1-P	Field mustard	cytosol	92.86	92.86
Bra012580.1-P	Field mustard	cytosol	92.86	92.86
KRH25819	Soybean	nucleus	92.31	92.82
VIT_12s0028g01800.t01	Wine grape	cytosol	87.36	91.91
CDY64920	Canola	cytosol	92.31	91.8
GSMUA_Achr1P20570_001	Banana	cytosol	18.13	91.67
CDX99436	Canola	cytosol, extracellular	92.31	91.3
Os06t0550000-00	Rice	plastid	98.9	90.45
KRH62765	Soybean	cytosol	51.1	90.29
VIT_10s0003g01520.t01	Wine grape	cytosol	90.66	88.71
Bra017591.1-P	Field mustard	cytosol	83.52	85.39
CDX98322	Canola	cytosol	67.58	84.83
Zm00001d016011_P001	Maize	cytosol	35.71	83.33
KRH56320	Soybean	cytosol, nucleus	87.91	80.4
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	92.86	77.88
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	92.86	77.88
Zm00001d030198_P001	Maize	cytosol	57.69	76.09
KRH16362	Soybean	mitochondrion	36.81	75.28
CDY26360	Canola	plastid	92.86	74.45
CDX87764	Canola	mitochondrion	92.31	73.68
Solyc04g080150.1.1	Tomato	unclear	37.36	69.39
CDX71934	Canola	cytosol	92.86	66.27
CDY49245	Canola	cytosol	92.86	65.25
VIT_03s0017g00140.t01	Wine grape	cytosol	34.62	62.38
VIT_19s0014g02400.t01	Wine grape	cytosol	36.26	62.26
GSMUA_Achr1P20580_001	Banana	cytosol	15.93	59.18
Zm00001d004475_P001	Maize	cytosol	26.92	57.65
VIT_17s0053g00180.t01	Wine grape	cytosol	28.57	42.98
Zm00001d040878_P001	Maize	cytosol	53.3	31.29
KRH12095	Soybean	cytosol, plastid, vacuole	9.34	11.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EntrezGene:4327087	EMBL:AK067763	ProteinID:BAA92964.1	ProteinID:BAF04253.1
ProteinID:BAS70939.1	ProteinID:EAZ10965.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR022803
EnsemblPlantsGene:Os01g0205500	EnsemblPlants:Os01t0205500-01	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358
PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	UniProt:Q9LWN1	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS
InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI00000A6326	RefSeq:XP_015617797.1	SEG:seg

Description

Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2. (Os01t0205500-01)

Coordinates

chr1:+:5770062..5772270

Molecular Weight (calculated)

20821.3 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.485

Length

182 amino acids

Sequence
(BLAST)

001: MASEKKQANP MREIKVQKLV LNISVGESGD RLTRASKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSE
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERAGYRV ARRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKAQAN TS

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.