Factsheet for Zm00001d040878_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016011_P001	Maize	cytosol	20.97	83.33
Zm00001d030198_P001	Maize	cytosol	28.71	64.49
GSMUA_Achr1P20580_001	Banana	cytosol	9.03	57.14
Zm00001d004475_P001	Maize	cytosol	15.16	55.29
Zm00001d010016_P002	Maize	cytosol	32.26	55.25
Zm00001d046317_P001	Maize	plastid	32.26	54.95
KXG31594	Sorghum	cytosol	31.94	54.4
Os01t0205500-01	Rice	nucleus	31.29	53.3
Zm00001d053547_P003	Maize	plastid	31.94	52.94
GSMUA_Achr1P20570_001	Banana	cytosol	2.9	25.0
Zm00001d009311_P001	Maize	nucleus	8.39	23.64
Zm00001d000159_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.1440.10	MapMan:35.1	UniProt:A0A1D6MTG0	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	InterPro:IPR022803	ProteinID:ONM32174.1	PFAM:PF00281	PFAM:PF00673	ScanProsite:PS00358
PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N
InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	TMHMM:TMhelix	UniParc:UPI0008456C17	EnsemblPlantsGene:Zm00001d040878	EnsemblPlants:Zm00001d040878_P001
EnsemblPlants:Zm00001d040878_T001	SEG:seg	:	:	:	:

Description

60S ribosomal protein L11-1

Coordinates

chr3:+:74729449..74733697

Molecular Weight (calculated)

34571.3 Da

IEP (calculated)

8.941

GRAVY (calculated)

-0.346

Length

310 amino acids

Sequence
(BLAST)

001: MFNLGEAKNS FVLWPKSGIQ LAEETTVHAK PQQVPDTSPQ GHAGFATCPL LPDEIANVRE RLLDFFMNEP NESLYEQKPE ETAPVLPSSV IASTTARSKP
101: HTSRFEYVEN APAPKTGSSS EGNLMSGHVA PPKSSNFFVE FGMDSGYHKK YTSSSSKVQS LNLLLVLIML IPFSSVFFSA HRIIRSSRVC DSDDVSWWCL
201: RFQASEKKQS NPMREMKVQK LVLNISVDES GDRLTRAAKV LEQLSGQSPV FSKARYTVRS FGIRRSEKIA CYVTVRGEKA MQLLESGLKV KENELLRRNF
301: SDTGCFGFGI

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.