Factsheet for GSMUA_Achr1P20580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28800_001	Banana	cytosol	51.02	80.65
Zm00001d016011_P001	Maize	cytosol	46.94	29.49
Zm00001d004475_P001	Maize	cytosol	36.73	21.18
Zm00001d030198_P001	Maize	cytosol	59.18	21.01
GSMUA_Achr11P...	Banana	cytosol	59.18	16.86
GSMUA_Achr6P05600_001	Banana	cytosol	59.18	16.86
GSMUA_Achr6P14670_001	Banana	cytosol	59.18	16.86
TraesCS1A01G125100.1	Wheat	nucleus	61.22	16.67
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	61.22	16.67
Zm00001d010016_P002	Maize	cytosol	61.22	16.57
KXG31594	Sorghum	cytosol	61.22	16.48
Zm00001d046317_P001	Maize	plastid	61.22	16.48
GSMUA_Achr2P15520_001	Banana	plastid	44.9	16.3
TraesCS1B01G144300.1	Wheat	cytosol	55.1	16.07
Os05t0207300-01	Rice	plasma membrane	59.18	15.93
Os01t0205500-01	Rice	nucleus	59.18	15.93
EES04818	Sorghum	cytosol	59.18	15.93
EES04817	Sorghum	cytosol	59.18	15.93
KXG29884	Sorghum	cytosol	59.18	15.93
KXG20149	Sorghum	cytosol	61.22	15.62
TraesCS3B01G154600.1	Wheat	cytosol	57.14	15.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	57.14	15.56
TraesCS3A01G136800.1	Wheat	cytosol	57.14	15.56
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	57.14	15.56
Zm00001d053547_P003	Maize	plastid	59.18	15.51
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	57.14	15.38
Os06t0550000-00	Rice	plastid	59.18	14.57
HORVU1Hr1G028820.1	Barley	mitochondrion	61.22	14.56
GSMUA_Achr6P21560_001	Banana	plasma membrane	59.18	12.89
Zm00001d040878_P001	Maize	cytosol	57.14	9.03
GSMUA_Achr7P09400_001	Banana	endoplasmic reticulum, extracellular	59.18	6.86
GSMUA_Achr9P28790_001	Banana	cytosol	6.12	2.26
GSMUA_Achr2P15510_001	Banana	cytosol	0.0	0.0
GSMUA_Achr1P20570_001	Banana	cytosol	0.0	0.0
EES17871	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.1440.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G20580_001	EnsemblPlants:GSMUA_Achr1P20580_001
EnsemblPlants:GSMUA_Achr1T20580_001	InterPro:IPR022803	UniProt:M0S1L6	PFAM:PF00281	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15
InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI000295827C	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G20580_001]

Coordinates

chr1:-:15487726..15489268

Molecular Weight (calculated)

5674.9 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.051

Length

49 amino acids

Sequence
(BLAST)

1: MREIKVQKVV LNISVGESDD RLTRAAKILR KFSVLYSQVY CSVLWDSTQ

Best Arabidopsis Sequence Match ( AT5G45775.1 )
(BLAST)

001: MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD TGCFGFGIQE
101: HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.