Factsheet for HORVU3Hr1G026060.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G136800.1	Wheat	cytosol	99.44	99.44
TraesCS3B01G154600.1	Wheat	cytosol	99.44	99.44
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	99.44	99.44
CDX77611	Canola	cytosol	87.22	91.28
CDY60533	Canola	cytosol	87.22	91.28
CDY23103	Canola	cytosol	87.22	91.28
CDY00582	Canola	cytosol	87.22	91.28
CDX78887	Canola	cytosol	86.67	90.7
CDY39447	Canola	cytosol	86.67	90.7
CDY62552	Canola	cytosol	86.67	90.7
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	91.67	90.66
Os05t0207300-01	Rice	plasma membrane	91.67	90.66
KRH62765	Soybean	cytosol	51.67	90.29
KXG29884	Sorghum	cytosol	91.11	90.11
AT2G42740.1	Thale cress	cytosol	91.11	90.11
EES04818	Sorghum	cytosol	91.11	90.11
EES04817	Sorghum	cytosol	91.11	90.11
KRH13277	Soybean	cytosol	90.56	90.06
KRH62493	Soybean	endoplasmic reticulum, nucleus	90.56	90.06
KRH25821	Soybean	cytosol	90.56	90.06
KRH55687	Soybean	nucleus	90.56	90.06
KRH55704	Soybean	cytosol	90.56	90.06
KRH56423	Soybean	cytosol	90.56	90.06
VIT_12s0028g01800.t01	Wine grape	cytosol	86.11	89.6
AT5G45775.2	Thale cress	cytosol	90.56	89.56
AT3G58700.1	Thale cress	cytosol	90.56	89.56
Bra021990.1-P	Field mustard	cytosol	90.56	89.56
AT4G18730.1	Thale cress	cytosol	90.56	89.56
PGSC0003DMT400020315	Potato	cytosol	90.0	89.5
KRH25819	Soybean	nucleus	90.0	89.5
Solyc12g010930.1.1	Tomato	extracellular	90.0	89.5
PGSC0003DMT400027379	Potato	cytosol	90.0	89.5
PGSC0003DMT400052643	Potato	cytosol	90.0	89.5
PGSC0003DMT400067873	Potato	cytosol	90.0	89.5
Solyc02g086240.2.1	Tomato	cytosol	90.0	89.5
Solyc10g007980.2.1	Tomato	cytosol	90.0	89.5
Solyc07g055230.2.1	Tomato	cytosol	90.0	89.5
Bra025058.1-P	Field mustard	cytosol	90.0	89.01
Bra013342.1-P	Field mustard	cytosol	90.0	89.01
Bra012580.1-P	Field mustard	cytosol	90.0	89.01
CDY64920	Canola	cytosol	89.44	87.98
HORVU0Hr1G003140.1	Barley	mitochondrion	35.56	87.67
CDX99436	Canola	cytosol, extracellular	89.44	87.5
Zm00001d053547_P003	Maize	plastid	90.0	86.63
GSMUA_Achr1P20570_001	Banana	cytosol	17.22	86.11
VIT_10s0003g01520.t01	Wine grape	cytosol	88.89	86.02
HORVU1Hr1G032650.1	Barley	mitochondrion	43.33	85.71
HORVU1Hr1G028820.1	Barley	mitochondrion	97.78	85.44
Bra017591.1-P	Field mustard	cytosol	82.78	83.71
CDX98322	Canola	cytosol	67.22	83.45
HORVU7Hr1G044560.1	Barley	mitochondrion	43.33	82.11
KRH56320	Soybean	cytosol, nucleus	85.56	77.39
KRH16362	Soybean	mitochondrion	37.78	76.4
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	90.56	75.12
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	90.56	75.12
CDY26360	Canola	plastid	90.56	71.81
CDX87764	Canola	mitochondrion	90.0	71.05
Solyc04g080150.1.1	Tomato	unclear	37.22	68.37
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	34.44	64.58
CDX71934	Canola	cytosol	90.56	63.92
CDY49245	Canola	cytosol	90.56	62.93
VIT_03s0017g00140.t01	Wine grape	cytosol	33.89	60.4
VIT_19s0014g02400.t01	Wine grape	cytosol	35.56	60.38
GSMUA_Achr1P20580_001	Banana	cytosol	15.56	57.14
VIT_17s0053g00180.t01	Wine grape	cytosol	28.33	42.15
KRH12095	Soybean	cytosol, plastid, vacuole	9.44	11.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:HORVU3Hr1G026060
EnsemblPlants:HORVU3Hr1G026060.1	InterPro:IPR022803	UniProt:M0UFX2	PFAM:PF00281	PFAM:PF00673	PIRSF:PIRSF002161
ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS
InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI00003D6E7B	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:-:103986514..103988924

Molecular Weight (calculated)

20709.3 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.483

Length

180 amino acids

Sequence
(BLAST)

001: MSTEKKQMNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTIRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGMKYDP STGIYGMDFF VVLERAGYRV SRRRRCKARV GIHQRVTKED AMKWFQVKYE GVILNKSHAS

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.