CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13277	Soybean	cytosol	100.0	100.0
KRH62493	Soybean	endoplasmic reticulum, nucleus	100.0	100.0
KRH55704	Soybean	cytosol	100.0	100.0
KRH25821	Soybean	cytosol	100.0	100.0
KRH55687	Soybean	nucleus	99.45	99.45
KRH25819	Soybean	nucleus	98.89	98.89
KRH62765	Soybean	cytosol	54.7	96.12
Bra012580.1-P	Field mustard	cytosol	95.58	95.05
Bra013342.1-P	Field mustard	cytosol	95.58	95.05
Bra021990.1-P	Field mustard	cytosol	95.58	95.05
Bra025058.1-P	Field mustard	cytosol	95.58	95.05
VIT_12s0028g01800.t01	Wine grape	cytosol	90.61	94.8
CDX78887	Canola	cytosol	90.06	94.77
CDX77611	Canola	cytosol	90.06	94.77
CDY62552	Canola	cytosol	90.06	94.77
CDY00582	Canola	cytosol	90.06	94.77
CDY23103	Canola	cytosol	90.06	94.77
CDY60533	Canola	cytosol	90.06	94.77
CDY39447	Canola	cytosol	90.06	94.77
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	95.03	94.51
AT3G58700.1	Thale cress	cytosol	95.03	94.51
AT5G45775.2	Thale cress	cytosol	95.03	94.51
AT2G42740.1	Thale cress	cytosol	95.03	94.51
AT4G18730.1	Thale cress	cytosol	95.03	94.51
Solyc12g010930.1.1	Tomato	extracellular	94.48	94.48
Solyc10g007980.2.1	Tomato	cytosol	94.48	94.48
Solyc07g055230.2.1	Tomato	cytosol	94.48	94.48
Solyc02g086240.2.1	Tomato	cytosol	94.48	94.48
PGSC0003DMT400067873	Potato	cytosol	94.48	94.48
PGSC0003DMT400052643	Potato	cytosol	94.48	94.48
PGSC0003DMT400027379	Potato	cytosol	94.48	94.48
PGSC0003DMT400020315	Potato	cytosol	94.48	94.48
CDY64920	Canola	cytosol	95.03	93.99
EES04817	Sorghum	cytosol	94.48	93.96
EES04818	Sorghum	cytosol	94.48	93.96
KXG31594	Sorghum	cytosol	94.48	93.96
KXG29884	Sorghum	cytosol	94.48	93.96
CDX99436	Canola	cytosol, extracellular	95.03	93.48
Os05t0207300-01	Rice	plasma membrane	93.92	93.41
Os01t0205500-01	Rice	nucleus	93.37	92.86
TraesCS1B01G144300.1	Wheat	cytosol	86.19	92.86
TraesCS1A01G125100.1	Wheat	nucleus	91.16	91.67
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	90.61	91.11
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	90.06	90.56
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	90.06	90.56
TraesCS3A01G136800.1	Wheat	cytosol	90.06	90.56
TraesCS3B01G154600.1	Wheat	cytosol	90.06	90.56
EES17871	Sorghum	cytosol	38.67	89.74
Bra017591.1-P	Field mustard	cytosol	85.08	86.52
CDX98322	Canola	cytosol	69.06	86.21
Os06t0550000-00	Rice	plastid	93.37	84.92
KXG20149	Sorghum	cytosol	89.5	84.38
KRH56320	Soybean	cytosol, nucleus	92.27	83.92
HORVU0Hr1G003140.1	Barley	mitochondrion	33.15	82.19
HORVU1Hr1G032650.1	Barley	mitochondrion	40.33	80.22
KRH16362	Soybean	mitochondrion	39.23	79.78
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.58	79.72
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	95.58	79.72
HORVU1Hr1G028820.1	Barley	mitochondrion	90.61	79.61
HORVU7Hr1G044560.1	Barley	mitochondrion	40.88	77.89
CDY26360	Canola	plastid	95.58	76.21
CDX87764	Canola	mitochondrion	95.03	75.44
EES00248	Sorghum	cytosol, plastid, vacuole	19.89	73.47
Solyc04g080150.1.1	Tomato	unclear	38.12	70.41
CDX71934	Canola	cytosol	95.58	67.84
CDY49245	Canola	cytosol	95.58	66.8
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	32.04	60.42
KRH12095	Soybean	cytosol, plastid, vacuole	9.94	12.0

Protein Annotations

EntrezGene:100499863	EntrezGene:100791687	EntrezGene:100810082	EntrezGene:100818410	EntrezGene:100819731	MapMan:17.1.2.1.11
Gene3D:3.30.1440.10	EMBL:ACUP02002297	EMBL:ACUP02004046	EMBL:ACUP02004115	EMBL:ACUP02007344	EMBL:ACUP02009680
EMBL:BT089882	EMBL:BT099447	UniProt:C6SXI7	EnsemblPlantsGene:GLYMA_06G323000	GO:GO:0000027	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	InterPro:IPR022803	ProteinID:KRH13277.1	ProteinID:KRH25821.1	ProteinID:KRH55704.1
EnsemblPlants:KRH56423	ProteinID:KRH56423	ProteinID:KRH56423.1	ProteinID:KRH62493.1	PFAM:PF00281	PFAM:PF00673
PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C
InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0001B1535F	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:51103343..51105771

Molecular Weight (calculated)

20714.4 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.393

Length

181 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MREIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGDKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFF VVLERPGYRV GRRRRCKSRV GIQHRVTKED AMKWFQVKYE GVILNKSQAI V

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.