Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G003140.1 | Barley | mitochondrion | 40.82 | 54.79 |
| HORVU7Hr1G062960.1 | Barley | cytosol, mitochondrion, plastid | 43.88 | 44.79 |
| HORVU7Hr1G044560.1 | Barley | mitochondrion | 42.86 | 44.21 |
| HORVU1Hr1G032650.1 | Barley | mitochondrion | 40.82 | 43.96 |
| Solyc12g010930.1.1 | Tomato | extracellular | 75.51 | 40.88 |
| Solyc10g007980.2.1 | Tomato | cytosol | 75.51 | 40.88 |
| Solyc07g055230.2.1 | Tomato | cytosol | 75.51 | 40.88 |
| Solyc02g086240.2.1 | Tomato | cytosol | 75.51 | 40.88 |
| PGSC0003DMT400020315 | Potato | cytosol | 75.51 | 40.88 |
| CDX77611 | Canola | cytosol | 70.41 | 40.12 |
| CDX78887 | Canola | cytosol | 70.41 | 40.12 |
| CDY62552 | Canola | cytosol | 70.41 | 40.12 |
| CDY60533 | Canola | cytosol | 70.41 | 40.12 |
| CDY39447 | Canola | cytosol | 70.41 | 40.12 |
| CDY00582 | Canola | cytosol | 70.41 | 40.12 |
| CDY23103 | Canola | cytosol | 70.41 | 40.12 |
| CDX98322 | Canola | cytosol | 59.18 | 40.0 |
| TraesCS1B01G144300.1 | Wheat | cytosol | 68.37 | 39.88 |
| VIT_12s0028g01800.t01 | Wine grape | cytosol | 69.39 | 39.31 |
| Bra017591.1-P | Field mustard | cytosol | 69.39 | 38.2 |
| KRH25819 | Soybean | nucleus | 70.41 | 38.12 |
| KRH25821 | Soybean | cytosol | 70.41 | 38.12 |
| KRH13277 | Soybean | cytosol | 70.41 | 38.12 |
| KRH55687 | Soybean | nucleus | 70.41 | 38.12 |
| KRH55704 | Soybean | cytosol | 70.41 | 38.12 |
| KRH56423 | Soybean | cytosol | 70.41 | 38.12 |
| KRH62493 | Soybean | endoplasmic reticulum, nucleus | 70.41 | 38.12 |
| AT3G58700.1 | Thale cress | cytosol | 70.41 | 37.91 |
| AT2G42740.1 | Thale cress | cytosol | 70.41 | 37.91 |
| Bra021990.1-P | Field mustard | cytosol | 70.41 | 37.91 |
| Bra013342.1-P | Field mustard | cytosol | 70.41 | 37.91 |
| Bra025058.1-P | Field mustard | cytosol | 70.41 | 37.91 |
| Bra012580.1-P | Field mustard | cytosol | 70.41 | 37.91 |
| AT5G45775.2 | Thale cress | cytosol | 70.41 | 37.91 |
| AT4G18730.1 | Thale cress | cytosol | 70.41 | 37.91 |
| CDY64920 | Canola | cytosol | 70.41 | 37.7 |
| CDX99436 | Canola | cytosol, extracellular | 70.41 | 37.5 |
| Os05t0207300-01 | Rice | plasma membrane | 69.39 | 37.36 |
| Os01t0205500-01 | Rice | nucleus | 69.39 | 37.36 |
| KXG31594 | Sorghum | cytosol | 69.39 | 37.36 |
| KXG29884 | Sorghum | cytosol | 69.39 | 37.36 |
| EES04818 | Sorghum | cytosol | 69.39 | 37.36 |
| EES04817 | Sorghum | cytosol | 69.39 | 37.36 |
| TraesCS3B01G154600.1 | Wheat | cytosol | 68.37 | 37.22 |
| HORVU3Hr1G026060.1 | Barley | cytosol, plasma membrane | 68.37 | 37.22 |
| TraesCS1A01G125100.1 | Wheat | nucleus | 68.37 | 37.22 |
| TraesCS3D01G137600.1 | Wheat | cytosol, extracellular, golgi | 68.37 | 37.22 |
| TraesCS1D01G128800.1 | Wheat | cytosol, golgi, unclear | 68.37 | 37.22 |
| TraesCS3A01G136800.1 | Wheat | cytosol | 68.37 | 37.22 |
| Os02t0235600-01 | Rice | cytosol, golgi, nucleus, plasma membrane | 68.37 | 36.81 |
| KRH16362 | Soybean | mitochondrion | 32.65 | 35.96 |
| Os06t0550000-00 | Rice | plastid | 69.39 | 34.17 |
| HORVU1Hr1G028820.1 | Barley | mitochondrion | 68.37 | 32.52 |
| GSMUA_Achr9P28800_001 | Banana | cytosol | 10.2 | 32.26 |
| Bra014558.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 70.41 | 31.8 |
| CDX88999 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 70.41 | 31.8 |
| KXG20149 | Sorghum | cytosol | 62.24 | 31.77 |
| KRH56320 | Soybean | cytosol, nucleus | 64.29 | 31.66 |
| CDY26360 | Canola | plastid | 70.41 | 30.4 |
| CDX87764 | Canola | mitochondrion | 70.41 | 30.26 |
| EES17871 | Sorghum | cytosol | 22.45 | 28.21 |
| VIT_19s0014g02400.t01 | Wine grape | cytosol | 29.59 | 27.36 |
| CDX71934 | Canola | cytosol | 70.41 | 27.06 |
| CDY49245 | Canola | cytosol | 70.41 | 26.64 |
| VIT_03s0017g00140.t01 | Wine grape | cytosol | 26.53 | 25.74 |
| KRH62765 | Soybean | cytosol | 24.49 | 23.3 |
| EES00248 | Sorghum | cytosol, plastid, vacuole | 9.18 | 18.37 |
| VIT_17s0053g00180.t01 | Wine grape | cytosol | 20.41 | 16.53 |
| KRH12095 | Soybean | cytosol, plastid, vacuole | 6.12 | 4.0 |
| Zm00001d000159_P001 | Maize | cytosol | 1.02 | 2.08 |
Protein Annotations
| Gene3D:3.30.1440.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR022803 | UniProt:K4BV94 |
| PFAM:PF00281 | ScanProsite:PS00358 | PANTHER:PTHR11994 | PANTHER:PTHR11994:SF15 | InterPro:Ribosomal_L5 | InterPro:Ribosomal_L5_CS |
| InterPro:Ribosomal_L5_N | InterPro:Ribosomal_L5_dom_sf | SUPFAM:SSF55282 | EnsemblPlantsGene:Solyc04g080150.1 | EnsemblPlants:Solyc04g080150.1.1 | UniParc:UPI0002765660 |
Description
No Description!
Coordinates
chr4:-:64416167..64417297
Molecular Weight (calculated)
11473.1 Da
IEP (calculated)
10.658
GRAVY (calculated)
-0.291
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MSVAETGDRL TAATKVLEQL SGQSPVFSKA RYTLRSFRTR RNEKIACYVI VRRKKAMQLL LKVQVWIGIQ DYFTKEDSMK WFHVKYEVIL LNNSSNIQ
001: MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD TGCFGFGIQE
101: HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG
101: HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG
Arabidopsis Description
RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.