CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77611	Canola	cytosol	67.45	100.0
CDY00582	Canola	cytosol	67.45	100.0
CDY23103	Canola	cytosol	67.45	100.0
CDY60533	Canola	cytosol	67.45	100.0
AT2G42740.1	Thale cress	cytosol	70.98	99.45
CDX78887	Canola	cytosol	67.06	99.42
CDY39447	Canola	cytosol	67.06	99.42
CDY62552	Canola	cytosol	67.06	99.42
AT3G58700.1	Thale cress	cytosol	70.59	98.9
CDY64920	Canola	cytosol	70.59	98.36
CDX99436	Canola	cytosol, extracellular	70.59	97.83
KRH25821	Soybean	cytosol	67.84	95.58
KRH62493	Soybean	endoplasmic reticulum, nucleus	67.84	95.58
KRH56423	Soybean	cytosol	67.84	95.58
KRH55704	Soybean	cytosol	67.84	95.58
KRH13277	Soybean	cytosol	67.84	95.58
Solyc12g010930.1.1	Tomato	extracellular	67.45	95.03
Solyc10g007980.2.1	Tomato	cytosol	67.45	95.03
Solyc07g055230.2.1	Tomato	cytosol	67.45	95.03
Solyc02g086240.2.1	Tomato	cytosol	67.45	95.03
PGSC0003DMT400067873	Potato	cytosol	67.45	95.03
PGSC0003DMT400052643	Potato	cytosol	67.45	95.03
PGSC0003DMT400027379	Potato	cytosol	67.45	95.03
PGSC0003DMT400020315	Potato	cytosol	67.45	95.03
KRH55687	Soybean	nucleus	67.45	95.03
KRH25819	Soybean	nucleus	67.45	95.03
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	67.45	94.51
EES04817	Sorghum	cytosol	67.06	93.96
KXG29884	Sorghum	cytosol	67.06	93.96
EES04818	Sorghum	cytosol	67.06	93.96
Os05t0207300-01	Rice	plasma membrane	66.67	93.41
Os01t0205500-01	Rice	nucleus	66.27	92.86
KXG31594	Sorghum	cytosol	66.27	92.86
KRH62765	Soybean	cytosol	37.25	92.23
VIT_10s0003g01520.t01	Wine grape	cytosol	66.67	91.4
TraesCS1B01G144300.1	Wheat	cytosol	60.0	91.07
TraesCS3A01G136800.1	Wheat	cytosol	63.92	90.56
TraesCS3B01G154600.1	Wheat	cytosol	63.92	90.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	63.92	90.56
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	63.92	90.56
CDX98322	Canola	cytosol	51.37	90.34
TraesCS1A01G125100.1	Wheat	nucleus	63.14	89.44
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	76.08	89.4
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	62.75	88.89
EES17871	Sorghum	cytosol	27.06	88.46
CDY49245	Canola	cytosol	88.63	87.26
Os06t0550000-00	Rice	plastid	66.67	85.43
HORVU0Hr1G003140.1	Barley	mitochondrion	23.92	83.56
KXG20149	Sorghum	cytosol	62.75	83.33
CDY26360	Canola	plastid	73.73	82.82
CDX87764	Canola	mitochondrion	73.33	82.02
KRH56320	Soybean	cytosol, nucleus	63.92	81.91
HORVU1Hr1G032650.1	Barley	mitochondrion	29.02	81.32
GSMUA_Achr9P28800_001	Banana	cytosol	9.8	80.65
HORVU7Hr1G044560.1	Barley	mitochondrion	29.41	78.95
HORVU1Hr1G028820.1	Barley	mitochondrion	63.14	78.16
KRH16362	Soybean	mitochondrion	27.06	77.53
EES00248	Sorghum	cytosol, plastid, vacuole	14.12	73.47
Solyc04g080150.1.1	Tomato	unclear	27.06	70.41
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	23.14	61.46
KRH12095	Soybean	cytosol, plastid, vacuole	6.27	10.67
Zm00001d000159_P001	Maize	cytosol	1.57	8.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:A0A078C6Z1	EnsemblPlants:CDX71934	ProteinID:CDX71934	ProteinID:CDX71934.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00155689001	InterPro:IPR022803	PFAM:PF00281	PFAM:PF00673
ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS
InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0004EDB48C	SEG:seg	:

Description

BnaC08g29400D

Coordinates

chrLK031795:-:1369203..1370933

Molecular Weight (calculated)

28641.0 Da

IEP (calculated)

10.456

GRAVY (calculated)

-0.125

Length

255 amino acids

Sequence
(BLAST)

001: MERGSVVSKI MGLRACLSGV LSKGRVVISL LVILHFRTLD TLGFIYFAAA SSVISFDSSF PFPAGVFSQP ESQMASEKKL SNPMRDIKVQ KLVLNISVGE
101: SGDRLTRASK VLEQLSGQTP VFSKARYTVR SFGIRRNEKI ACYVTVRGDK AMQLLESGLK VKEYELLRRN FSDTGCFGFG IQEHIDLGIK YDPSTGIYGM
201: DFYVVLERPG YRVARRRRCK ARVGIQHRVT KDDAMKWFQV KYEGVILNKS QNITG

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.