CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64920	Canola	cytosol	99.46	100.0
CDX78887	Canola	cytosol	93.48	100.0
CDY62552	Canola	cytosol	93.48	100.0
CDY39447	Canola	cytosol	93.48	100.0
CDX77611	Canola	cytosol	92.93	99.42
CDY60533	Canola	cytosol	92.93	99.42
CDY00582	Canola	cytosol	92.93	99.42
CDY23103	Canola	cytosol	92.93	99.42
AT4G18730.1	Thale cress	cytosol	97.83	98.9
KRH55704	Soybean	cytosol	93.48	95.03
KRH56423	Soybean	cytosol	93.48	95.03
KRH62493	Soybean	endoplasmic reticulum, nucleus	93.48	95.03
KRH25821	Soybean	cytosol	93.48	95.03
KRH13277	Soybean	cytosol	93.48	95.03
PGSC0003DMT400020315	Potato	cytosol	92.93	94.48
KRH55687	Soybean	nucleus	92.93	94.48
Solyc02g086240.2.1	Tomato	cytosol	92.93	94.48
KRH25819	Soybean	nucleus	92.93	94.48
PGSC0003DMT400027379	Potato	cytosol	92.93	94.48
PGSC0003DMT400052643	Potato	cytosol	92.93	94.48
PGSC0003DMT400067873	Potato	cytosol	92.93	94.48
Solyc07g055230.2.1	Tomato	cytosol	92.93	94.48
Solyc10g007980.2.1	Tomato	cytosol	92.93	94.48
Solyc12g010930.1.1	Tomato	extracellular	92.93	94.48
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	92.93	93.96
KXG29884	Sorghum	cytosol	91.85	92.86
Os05t0207300-01	Rice	plasma membrane	91.85	92.86
EES04818	Sorghum	cytosol	91.85	92.86
EES04817	Sorghum	cytosol	91.85	92.86
Os01t0205500-01	Rice	nucleus	91.3	92.31
KXG31594	Sorghum	cytosol	91.3	92.31
VIT_10s0003g01520.t01	Wine grape	cytosol	92.39	91.4
KRH62765	Soybean	cytosol	51.09	91.26
TraesCS1B01G144300.1	Wheat	cytosol	82.61	90.48
CDX98322	Canola	cytosol	71.2	90.34
TraesCS3B01G154600.1	Wheat	cytosol	87.5	89.44
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	87.5	89.44
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	87.5	89.44
TraesCS3A01G136800.1	Wheat	cytosol	87.5	89.44
EES17871	Sorghum	cytosol	37.5	88.46
TraesCS1A01G125100.1	Wheat	nucleus	86.41	88.33
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	85.87	87.78
Os06t0550000-00	Rice	plastid	92.39	85.43
HORVU0Hr1G003140.1	Barley	mitochondrion	33.15	83.56
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	97.83	82.95
KXG20149	Sorghum	cytosol	86.41	82.81
KRH56320	Soybean	cytosol, nucleus	88.04	81.41
HORVU1Hr1G032650.1	Barley	mitochondrion	40.22	81.32
GSMUA_Achr9P28800_001	Banana	cytosol	13.59	80.65
CDY26360	Canola	plastid	97.83	79.3
HORVU7Hr1G044560.1	Barley	mitochondrion	40.76	78.95
CDX87764	Canola	mitochondrion	97.28	78.51
KRH16362	Soybean	mitochondrion	37.5	77.53
HORVU1Hr1G028820.1	Barley	mitochondrion	85.87	76.7
EES00248	Sorghum	cytosol, plastid, vacuole	19.57	73.47
CDX71934	Canola	cytosol	97.83	70.59
Solyc04g080150.1.1	Tomato	unclear	37.5	70.41
CDY49245	Canola	cytosol	97.83	69.5
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	32.07	61.46
KRH12095	Soybean	cytosol, plastid, vacuole	8.7	10.67
Zm00001d000159_P001	Maize	cytosol	2.17	8.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:A0A078EE80	EnsemblPlants:CDX99436	ProteinID:CDX99436	ProteinID:CDX99436.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00107770001	InterPro:IPR022803	PFAM:PF00281
PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5
InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0004EE2096
SEG:seg	:	:	:	:	:

Description

BnaC01g11160D

Coordinates

chrLK031910:-:649360..650524

Molecular Weight (calculated)

21107.8 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.477

Length

184 amino acids

Sequence
(BLAST)

001: MMQASEKKLS NPMRDIKVQK LVLNISVGES GDRLTRASKV LEQLSGQTPV FSKARYTVRS FGIRRNEKIA CYVTVRGDKA MQLLESGLKV KEYELLRRNF
101: SDTGCFGFGI QEHIDLGIKY DPSTGIYGMD FYVVLERPGY RVARRRRCKT RVGIQHRVTK DDAMKWFQVK YEGVILNKSQ NITG

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.