CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00248	Sorghum	cytosol, plastid, vacuole	47.44	75.51
KRH62765	Soybean	cytosol	87.18	66.02
KRH16362	Soybean	mitochondrion	51.28	44.94
KXG31594	Sorghum	cytosol	94.87	40.66
CDY62552	Canola	cytosol	88.46	40.12
CDY60533	Canola	cytosol	88.46	40.12
CDY39447	Canola	cytosol	88.46	40.12
CDY23103	Canola	cytosol	88.46	40.12
CDY00582	Canola	cytosol	88.46	40.12
CDX77611	Canola	cytosol	88.46	40.12
CDX78887	Canola	cytosol	88.46	40.12
VIT_12s0028g01800.t01	Wine grape	cytosol	88.46	39.88
Zm00001d010016_P002	Maize	cytosol	91.03	39.23
KXG29884	Sorghum	cytosol	91.03	39.01
EES04818	Sorghum	cytosol	91.03	39.01
EES04817	Sorghum	cytosol	91.03	39.01
GSMUA_Achr1P20570_001	Banana	cytosol	17.95	38.89
KRH25819	Soybean	nucleus	89.74	38.67
KRH13277	Soybean	cytosol	89.74	38.67
KRH25821	Soybean	cytosol	89.74	38.67
KRH55687	Soybean	nucleus	89.74	38.67
KRH55704	Soybean	cytosol	89.74	38.67
KRH56423	Soybean	cytosol	89.74	38.67
KRH62493	Soybean	endoplasmic reticulum, nucleus	89.74	38.67
Solyc07g055230.2.1	Tomato	cytosol	88.46	38.12
Solyc10g007980.2.1	Tomato	cytosol	88.46	38.12
Solyc12g010930.1.1	Tomato	extracellular	88.46	38.12
Solyc02g086240.2.1	Tomato	cytosol	88.46	38.12
PGSC0003DMT400067873	Potato	cytosol	88.46	38.12
PGSC0003DMT400052643	Potato	cytosol	88.46	38.12
PGSC0003DMT400027379	Potato	cytosol	88.46	38.12
PGSC0003DMT400020315	Potato	cytosol	88.46	38.12
KXG20149	Sorghum	cytosol	93.59	38.02
AT3G58700.1	Thale cress	cytosol	88.46	37.91
Bra021990.1-P	Field mustard	cytosol	88.46	37.91
AT2G42740.1	Thale cress	cytosol	88.46	37.91
AT4G18730.1	Thale cress	cytosol	88.46	37.91
AT5G45775.2	Thale cress	cytosol	88.46	37.91
Bra012580.1-P	Field mustard	cytosol	88.46	37.91
Bra013342.1-P	Field mustard	cytosol	88.46	37.91
Bra025058.1-P	Field mustard	cytosol	88.46	37.91
CDY64920	Canola	cytosol	88.46	37.7
CDX99436	Canola	cytosol, extracellular	88.46	37.5
VIT_10s0003g01520.t01	Wine grape	cytosol	85.9	36.02
Bra017591.1-P	Field mustard	cytosol	78.21	34.27
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	88.46	31.8
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	88.46	31.8
KRH56320	Soybean	cytosol, nucleus	78.21	30.65
CDY26360	Canola	plastid	88.46	30.4
CDX87764	Canola	mitochondrion	87.18	29.82
CDX98322	Canola	cytosol	52.56	28.28
CDX71934	Canola	cytosol	88.46	27.06
CDY49245	Canola	cytosol	88.46	26.64
Solyc04g080150.1.1	Tomato	unclear	28.21	22.45
VIT_03s0017g00140.t01	Wine grape	cytosol	24.36	18.81
VIT_17s0053g00180.t01	Wine grape	cytosol	28.21	18.18
VIT_19s0014g02400.t01	Wine grape	cytosol	23.08	16.98
KRH12095	Soybean	cytosol, plastid, vacuole	10.26	5.33
GSMUA_Achr1P20580_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.1440.10	MapMan:35.1	UniProt:C5YUN3	EnsemblPlants:EES17871	ProteinID:EES17871	ProteinID:EES17871.1
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR022803	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15
InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_dom_sf	EnsemblPlantsGene:SORBI_3009G077200	SUPFAM:SSF55282	UniParc:UPI0001A889C5	RefSeq:XP_002439441.1

Description

hypothetical protein

Coordinates

chr9:+:10190231..10192984

Molecular Weight (calculated)

8945.9 Da

IEP (calculated)

9.275

GRAVY (calculated)

-0.364

Length

78 amino acids

Sequence
(BLAST)

1: MQLLESGLKV KEYELLRRNF SETGCFGFGI QEHIDLGISA RCKSRVGIQH RVTKEDAMKW FQVKYEGVIL NKAQGNTL

Best Arabidopsis Sequence Match ( AT3G58700.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.