Factsheet for Bra014558.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi

Predictor Summary:

mitochondrion 4
plastid 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	mitochondrion
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021990.1-P	Field mustard	cytosol	83.87	100.0
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	100.0	100.0
Bra012580.1-P	Field mustard	cytosol	83.41	99.45
Bra013342.1-P	Field mustard	cytosol	83.41	99.45
Bra025058.1-P	Field mustard	cytosol	83.41	99.45
AT2G42740.1	Thale cress	cytosol	83.41	99.45
AT3G58700.1	Thale cress	cytosol	82.95	98.9
KRH56423	Soybean	cytosol	79.72	95.58
KRH62493	Soybean	endoplasmic reticulum, nucleus	79.72	95.58
KRH55704	Soybean	cytosol	79.72	95.58
KRH25821	Soybean	cytosol	79.72	95.58
KRH13277	Soybean	cytosol	79.72	95.58
Solyc10g007980.2.1	Tomato	cytosol	79.26	95.03
Solyc02g086240.2.1	Tomato	cytosol	79.26	95.03
PGSC0003DMT400067873	Potato	cytosol	79.26	95.03
PGSC0003DMT400052643	Potato	cytosol	79.26	95.03
PGSC0003DMT400027379	Potato	cytosol	79.26	95.03
PGSC0003DMT400020315	Potato	cytosol	79.26	95.03
Solyc07g055230.2.1	Tomato	cytosol	79.26	95.03
Solyc12g010930.1.1	Tomato	extracellular	79.26	95.03
KRH55687	Soybean	nucleus	79.26	95.03
KRH25819	Soybean	nucleus	79.26	95.03
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	79.26	94.51
EES04818	Sorghum	cytosol	78.8	93.96
EES04817	Sorghum	cytosol	78.8	93.96
KXG29884	Sorghum	cytosol	78.8	93.96
Os05t0207300-01	Rice	plasma membrane	78.34	93.41
KXG31594	Sorghum	cytosol	77.88	92.86
Os01t0205500-01	Rice	nucleus	77.88	92.86
KRH62765	Soybean	cytosol	43.78	92.23
Bra017591.1-P	Field mustard	cytosol	75.12	91.57
VIT_10s0003g01520.t01	Wine grape	cytosol	78.34	91.4
TraesCS1B01G144300.1	Wheat	cytosol	70.51	91.07
TraesCS3A01G136800.1	Wheat	cytosol	75.12	90.56
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	75.12	90.56
TraesCS3B01G154600.1	Wheat	cytosol	75.12	90.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	75.12	90.56
TraesCS1A01G125100.1	Wheat	nucleus	74.19	89.44
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	73.73	88.89
EES17871	Sorghum	cytosol	31.8	88.46
Os06t0550000-00	Rice	plastid	78.34	85.43
HORVU0Hr1G003140.1	Barley	mitochondrion	28.11	83.56
KXG20149	Sorghum	cytosol	73.73	83.33
KRH56320	Soybean	cytosol, nucleus	75.12	81.91
HORVU1Hr1G032650.1	Barley	mitochondrion	34.1	81.32
GSMUA_Achr9P28800_001	Banana	cytosol	11.52	80.65
HORVU7Hr1G044560.1	Barley	mitochondrion	34.56	78.95
HORVU1Hr1G028820.1	Barley	mitochondrion	74.65	78.64
KRH16362	Soybean	mitochondrion	31.8	77.53
EES00248	Sorghum	cytosol, plastid, vacuole	16.59	73.47
Solyc04g080150.1.1	Tomato	unclear	31.8	70.41
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	27.19	61.46
KRH12095	Soybean	cytosol, plastid, vacuole	7.37	10.67
Zm00001d000159_P001	Maize	cytosol	1.84	8.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EnsemblPlantsGene:Bra014558	EnsemblPlants:Bra014558.1	EnsemblPlants:Bra014558.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR022803	UniProt:M4DDJ0	PFAM:PF00281	PFAM:PF00673
PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C
InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	SignalP:SignalP-noTM	UniParc:UPI00025441C0
SEG:seg	:	:	:	:	:

Description

AT4G18730 (E=1e-092) RPL16B | RPL16B; structural constituent of ribosome

Coordinates

chrA04:-:1449633..1450520

Molecular Weight (calculated)

24787.1 Da

IEP (calculated)

10.505

GRAVY (calculated)

-0.378

Length

217 amino acids

Sequence
(BLAST)

001: MRSRAYIFCC RFFALSFASS FNRSSAGVFS QPESQMASEK KLSNPMRDIK VQKLVLNISV GESGDRLTRA SKVLEQLSGQ TPVFSKARYT VRSFGIRRNE
101: KIACYVTVRG DKAMQLLESG LKVKEYELLR RNFSDTGCFG FGIQEHIDLG IKYDPSTGIY GMDFYVVLER PGYRVARRRR CKARVGIQHR VTKDDAMKWF
201: QVKYEGVILN KSQNITG

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.