Factsheet for TraesCS1D01G128800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G125100.1	Wheat	nucleus	99.44	99.44
TraesCS1B01G144300.1	Wheat	cytosol	92.78	99.4
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	98.33	98.33
KXG29884	Sorghum	cytosol	91.67	90.66
EES04817	Sorghum	cytosol	91.67	90.66
EES04818	Sorghum	cytosol	91.67	90.66
KRH25821	Soybean	cytosol	91.11	90.61
KRH62493	Soybean	endoplasmic reticulum, nucleus	91.11	90.61
KRH56423	Soybean	cytosol	91.11	90.61
KRH55704	Soybean	cytosol	91.11	90.61
KRH55687	Soybean	nucleus	91.11	90.61
KRH13277	Soybean	cytosol	91.11	90.61
KRH62765	Soybean	cytosol	51.67	90.29
CDX77611	Canola	cytosol	86.11	90.12
CDY60533	Canola	cytosol	86.11	90.12
CDY00582	Canola	cytosol	86.11	90.12
CDY23103	Canola	cytosol	86.11	90.12
Os05t0207300-01	Rice	plasma membrane	91.11	90.11
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	91.11	90.11
KRH25819	Soybean	nucleus	90.56	90.06
VIT_12s0028g01800.t01	Wine grape	cytosol	86.11	89.6
CDY39447	Canola	cytosol	85.56	89.53
CDY62552	Canola	cytosol	85.56	89.53
CDX78887	Canola	cytosol	85.56	89.53
PGSC0003DMT400020315	Potato	cytosol	89.44	88.95
PGSC0003DMT400027379	Potato	cytosol	89.44	88.95
PGSC0003DMT400052643	Potato	cytosol	89.44	88.95
PGSC0003DMT400067873	Potato	cytosol	89.44	88.95
Solyc02g086240.2.1	Tomato	cytosol	89.44	88.95
Solyc07g055230.2.1	Tomato	cytosol	89.44	88.95
Solyc10g007980.2.1	Tomato	cytosol	89.44	88.95
Solyc12g010930.1.1	Tomato	extracellular	89.44	88.95
AT2G42740.1	Thale cress	cytosol	89.44	88.46
AT3G58700.1	Thale cress	cytosol	88.89	87.91
AT4G18730.1	Thale cress	cytosol	88.89	87.91
AT5G45775.2	Thale cress	cytosol	88.89	87.91
Bra021990.1-P	Field mustard	cytosol	88.89	87.91
HORVU1Hr1G028820.1	Barley	mitochondrion	100.0	87.38
Bra012580.1-P	Field mustard	cytosol	88.33	87.36
Bra013342.1-P	Field mustard	cytosol	88.33	87.36
Bra025058.1-P	Field mustard	cytosol	88.33	87.36
Zm00001d053547_P003	Maize	plastid	90.56	87.17
CDY64920	Canola	cytosol	87.78	86.34
GSMUA_Achr1P20570_001	Banana	cytosol	17.22	86.11
CDX99436	Canola	cytosol, extracellular	87.78	85.87
VIT_10s0003g01520.t01	Wine grape	cytosol	88.33	85.48
Bra017591.1-P	Field mustard	cytosol	81.67	82.58
CDX98322	Canola	cytosol	66.11	82.07
KRH56320	Soybean	cytosol, nucleus	85.0	76.88
KRH16362	Soybean	mitochondrion	37.78	76.4
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	88.89	73.73
CDX88999	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	88.89	73.73
CDY26360	Canola	plastid	88.89	70.48
CDX87764	Canola	mitochondrion	88.33	69.74
Solyc04g080150.1.1	Tomato	unclear	37.22	68.37
CDX71934	Canola	cytosol	88.89	62.75
CDY49245	Canola	cytosol	88.89	61.78
GSMUA_Achr1P20580_001	Banana	cytosol	16.67	61.22
VIT_19s0014g02400.t01	Wine grape	cytosol	35.0	59.43
VIT_03s0017g00140.t01	Wine grape	cytosol	33.33	59.41
VIT_17s0053g00180.t01	Wine grape	cytosol	27.78	41.32
KRH12095	Soybean	cytosol, plastid, vacuole	11.11	13.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR022803	PFAM:PF00281
PFAM:PF00673	PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5
InterPro:Ribosomal_L5_C	InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	EnsemblPlantsGene:TraesCS1D01G128800
EnsemblPlants:TraesCS1D01G128800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:141941428..141943223

Molecular Weight (calculated)

20693.3 Da

IEP (calculated)

10.543

GRAVY (calculated)

-0.453

Length

180 amino acids

Sequence
(BLAST)

001: MSTEKKQLNT MREIKVQKLV LNISVGESGD RLTRAAKVLE QLSGQSPVFS KARYTVRSFG IRRNEKIACY VTIRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGMKYDP STGIYGMDFF VVLERAGYRV SRRRRCKARV GIHQRVTKED AMKWFQVKYE GVILNKSHAS

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.