Factsheet for Bra013342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012580.1-P	Field mustard	cytosol	100.0	100.0
Bra025058.1-P	Field mustard	cytosol	100.0	100.0
CDX78887	Canola	cytosol	94.51	100.0
AT4G18730.1	Thale cress	cytosol	99.45	99.45
Bra021990.1-P	Field mustard	cytosol	99.45	99.45
KRH56423	Soybean	cytosol	95.05	95.58
KRH62493	Soybean	endoplasmic reticulum, nucleus	95.05	95.58
KRH55704	Soybean	cytosol	95.05	95.58
KRH25821	Soybean	cytosol	95.05	95.58
KRH13277	Soybean	cytosol	95.05	95.58
KRH55687	Soybean	nucleus	94.51	95.03
PGSC0003DMT400020315	Potato	cytosol	94.51	95.03
PGSC0003DMT400027379	Potato	cytosol	94.51	95.03
PGSC0003DMT400052643	Potato	cytosol	94.51	95.03
PGSC0003DMT400067873	Potato	cytosol	94.51	95.03
Solyc02g086240.2.1	Tomato	cytosol	94.51	95.03
KRH25819	Soybean	nucleus	94.51	95.03
Solyc07g055230.2.1	Tomato	cytosol	94.51	95.03
Solyc12g010930.1.1	Tomato	extracellular	94.51	95.03
Solyc10g007980.2.1	Tomato	cytosol	94.51	95.03
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	94.51	94.51
EES04818	Sorghum	cytosol	93.41	93.41
EES04817	Sorghum	cytosol	93.41	93.41
Os05t0207300-01	Rice	plasma membrane	93.41	93.41
KXG29884	Sorghum	cytosol	93.41	93.41
Os01t0205500-01	Rice	nucleus	92.86	92.86
KXG31594	Sorghum	cytosol	92.86	92.86
KRH62765	Soybean	cytosol	51.65	91.26
Bra017591.1-P	Field mustard	cytosol	89.01	91.01
VIT_10s0003g01520.t01	Wine grape	cytosol	92.86	90.86
TraesCS1B01G144300.1	Wheat	cytosol	83.52	90.48
TraesCS3A01G136800.1	Wheat	cytosol	89.01	90.0
TraesCS3B01G154600.1	Wheat	cytosol	89.01	90.0
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	89.01	90.0
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	89.01	90.0
TraesCS1A01G125100.1	Wheat	nucleus	87.91	88.89
EES17871	Sorghum	cytosol	37.91	88.46
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	87.36	88.33
Os06t0550000-00	Rice	plastid	92.86	84.92
HORVU0Hr1G003140.1	Barley	mitochondrion	33.52	83.56
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	99.45	83.41
KXG20149	Sorghum	cytosol	87.91	83.33
KRH56320	Soybean	cytosol, nucleus	89.56	81.91
HORVU1Hr1G032650.1	Barley	mitochondrion	40.66	81.32
GSMUA_Achr9P28800_001	Banana	cytosol	13.74	80.65
HORVU7Hr1G044560.1	Barley	mitochondrion	41.21	78.95
KRH16362	Soybean	mitochondrion	37.91	77.53
HORVU1Hr1G028820.1	Barley	mitochondrion	87.36	77.18
EES00248	Sorghum	cytosol, plastid, vacuole	19.78	73.47
Solyc04g080150.1.1	Tomato	unclear	37.91	70.41
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	32.42	61.46
KRH12095	Soybean	cytosol, plastid, vacuole	8.79	10.67
Zm00001d000159_P001	Maize	cytosol	2.2	8.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	EnsemblPlantsGene:Bra013342	EnsemblPlants:Bra013342.1	EnsemblPlants:Bra013342.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR022803	UniProt:M4D7X0	PFAM:PF00281	PFAM:PF00673
PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C
InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI0001BA9014	SEG:seg

Description

AT4G18730 (E=2e-093) RPL16B | RPL16B; structural constituent of ribosome

Coordinates

chrA01:+:5104435..5105384

Molecular Weight (calculated)

20848.4 Da

IEP (calculated)

10.484

GRAVY (calculated)

-0.474

Length

182 amino acids

Sequence
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGDKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.