CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi

Predictor Summary:

mitochondrion 4
plastid 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	mitochondrion
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014558.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	100.0	100.0
CDX77611	Canola	cytosol	79.26	100.0
CDY60533	Canola	cytosol	79.26	100.0
CDY00582	Canola	cytosol	79.26	100.0
CDY23103	Canola	cytosol	79.26	100.0
AT2G42740.1	Thale cress	cytosol	83.41	99.45
CDX78887	Canola	cytosol	78.8	99.42
CDY62552	Canola	cytosol	78.8	99.42
CDY39447	Canola	cytosol	78.8	99.42
AT3G58700.1	Thale cress	cytosol	82.95	98.9
CDY64920	Canola	cytosol	82.95	98.36
CDX99436	Canola	cytosol, extracellular	82.95	97.83
KRH56423	Soybean	cytosol	79.72	95.58
KRH62493	Soybean	endoplasmic reticulum, nucleus	79.72	95.58
KRH55704	Soybean	cytosol	79.72	95.58
KRH25821	Soybean	cytosol	79.72	95.58
KRH13277	Soybean	cytosol	79.72	95.58
PGSC0003DMT400052643	Potato	cytosol	79.26	95.03
PGSC0003DMT400027379	Potato	cytosol	79.26	95.03
PGSC0003DMT400020315	Potato	cytosol	79.26	95.03
PGSC0003DMT400067873	Potato	cytosol	79.26	95.03
Solyc02g086240.2.1	Tomato	cytosol	79.26	95.03
Solyc07g055230.2.1	Tomato	cytosol	79.26	95.03
KRH55687	Soybean	nucleus	79.26	95.03
Solyc10g007980.2.1	Tomato	cytosol	79.26	95.03
Solyc12g010930.1.1	Tomato	extracellular	79.26	95.03
KRH25819	Soybean	nucleus	79.26	95.03
Os02t0235600-01	Rice	cytosol, golgi, nucleus, plasma membrane	79.26	94.51
EES04817	Sorghum	cytosol	78.8	93.96
EES04818	Sorghum	cytosol	78.8	93.96
KXG29884	Sorghum	cytosol	78.8	93.96
Os05t0207300-01	Rice	plasma membrane	78.34	93.41
Os01t0205500-01	Rice	nucleus	77.88	92.86
KXG31594	Sorghum	cytosol	77.88	92.86
KRH62765	Soybean	cytosol	43.78	92.23
VIT_10s0003g01520.t01	Wine grape	cytosol	78.34	91.4
TraesCS1B01G144300.1	Wheat	cytosol	70.51	91.07
TraesCS3A01G136800.1	Wheat	cytosol	75.12	90.56
TraesCS3B01G154600.1	Wheat	cytosol	75.12	90.56
TraesCS3D01G137600.1	Wheat	cytosol, extracellular, golgi	75.12	90.56
HORVU3Hr1G026060.1	Barley	cytosol, plasma membrane	75.12	90.56
CDX98322	Canola	cytosol	60.37	90.34
TraesCS1A01G125100.1	Wheat	nucleus	74.19	89.44
TraesCS1D01G128800.1	Wheat	cytosol, golgi, unclear	73.73	88.89
EES17871	Sorghum	cytosol	31.8	88.46
Os06t0550000-00	Rice	plastid	78.34	85.43
HORVU0Hr1G003140.1	Barley	mitochondrion	28.11	83.56
KXG20149	Sorghum	cytosol	73.73	83.33
KRH56320	Soybean	cytosol, nucleus	75.12	81.91
HORVU1Hr1G032650.1	Barley	mitochondrion	34.1	81.32
GSMUA_Achr9P28800_001	Banana	cytosol	11.52	80.65
CDY26360	Canola	plastid	84.33	80.62
CDX87764	Canola	mitochondrion	83.87	79.82
HORVU7Hr1G044560.1	Barley	mitochondrion	34.56	78.95
HORVU1Hr1G028820.1	Barley	mitochondrion	74.65	78.64
KRH16362	Soybean	mitochondrion	31.8	77.53
CDX71934	Canola	cytosol	89.4	76.08
CDY49245	Canola	cytosol	89.86	75.29
EES00248	Sorghum	cytosol, plastid, vacuole	16.59	73.47
Solyc04g080150.1.1	Tomato	unclear	31.8	70.41
HORVU7Hr1G062960.1	Barley	cytosol, mitochondrion, plastid	27.19	61.46
KRH12095	Soybean	cytosol, plastid, vacuole	7.37	10.67
Zm00001d000159_P001	Maize	cytosol	1.84	8.33

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:A0A078DK15	EnsemblPlants:CDX88999	ProteinID:CDX88999	ProteinID:CDX88999.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00149111001	InterPro:IPR022803	PFAM:PF00281	PFAM:PF00673
PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C
InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	SignalP:SignalP-noTM	UniParc:UPI00025441C0
SEG:seg	:	:	:	:	:

Description

BnaA04g01870D

Coordinates

chrLK031857:+:437538..438603

Molecular Weight (calculated)

24787.1 Da

IEP (calculated)

10.505

GRAVY (calculated)

-0.378

Length

217 amino acids

Sequence
(BLAST)

001: MRSRAYIFCC RFFALSFASS FNRSSAGVFS QPESQMASEK KLSNPMRDIK VQKLVLNISV GESGDRLTRA SKVLEQLSGQ TPVFSKARYT VRSFGIRRNE
101: KIACYVTVRG DKAMQLLESG LKVKEYELLR RNFSDTGCFG FGIQEHIDLG IKYDPSTGIY GMDFYVVLER PGYRVARRRR CKARVGIQHR VTKDDAMKWF
201: QVKYEGVILN KSQNITG

Best Arabidopsis Sequence Match ( AT2G42740.1 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKARV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11A60S ribosomal protein L11-1 [Source:UniProtKB/Swiss-Prot;Acc:P42795]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.