Factsheet for GSMUA_Achr6P21560_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05600_001	Banana	cytosol	76.0	99.42
GSMUA_Achr6P14670_001	Banana	cytosol	76.0	99.42
GSMUA_Achr11P...	Banana	cytosol	74.67	97.67
GSMUA_Achr1P20570_001	Banana	cytosol	14.22	88.89
GSMUA_Achr9P28800_001	Banana	cytosol	12.0	87.1
GSMUA_Achr2P15510_001	Banana	cytosol	22.22	84.75
GSMUA_Achr9P28790_001	Banana	cytosol	42.22	71.43
GSMUA_Achr1P20580_001	Banana	cytosol	12.89	59.18
GSMUA_Achr2P15520_001	Banana	plastid	30.67	51.11
GSMUA_Achr7P09400_001	Banana	endoplasmic reticulum, extracellular	79.56	42.32

Protein Annotations

MapMan:17.1.2.1.11	Gene3D:3.30.1440.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr6G21560_001
EnsemblPlants:GSMUA_Achr6P21560_001	EnsemblPlants:GSMUA_Achr6T21560_001	InterPro:IPR022803	UniProt:M0T904	PFAM:PF00281	PFAM:PF00673
PIRSF:PIRSF002161	ScanProsite:PS00358	PANTHER:PTHR11994	PANTHER:PTHR11994:SF15	InterPro:Ribosomal_L5	InterPro:Ribosomal_L5_C
InterPro:Ribosomal_L5_CS	InterPro:Ribosomal_L5_N	InterPro:Ribosomal_L5_dom_sf	SUPFAM:SSF55282	UniParc:UPI000295B3F3	SEG:seg

Description

60S ribosomal protein L11-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G21560_001]

Coordinates

chr6:-:18000123..18004230

Molecular Weight (calculated)

25591.3 Da

IEP (calculated)

10.590

GRAVY (calculated)

-0.414

Length

225 amino acids

Sequence
(BLAST)

001: MATARRMHKI DWLLGLHLDF PPLPVATLPE TPNLPSDPRR SPAMASEKKL SNPMREIKVQ KLVLNISVGE SGDRLTRAAK VLEQLSGQTP VFSKARYTVR
101: SFGIRRNEKI ACYVTVRGDK AMQLLESGLK VKEYELLRRN FSDTGCFGFG IQEHIDLGIK YDPSTGIYGM DFFVVLERAG YRVARRRRCK SRVGIQHRVT
201: KEDAMKWFQV KYEGVILNKS QTTTG

Best Arabidopsis Sequence Match ( AT5G45775.2 )
(BLAST)

001: MASEKKLSNP MRDIKVQKLV LNISVGESGD RLTRASKVLE QLSGQTPVFS KARYTVRSFG IRRNEKIACY VTVRGEKAMQ LLESGLKVKE YELLRRNFSD
101: TGCFGFGIQE HIDLGIKYDP STGIYGMDFY VVLERPGYRV ARRRRCKTRV GIQHRVTKDD AMKWFQVKYE GVILNKSQNI TG

Arabidopsis Description

RPL11B60S ribosomal protein L11-2 [Source:UniProtKB/Swiss-Prot;Acc:P42794]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.