Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G296400.1 | Wheat | cytosol | 89.79 | 91.34 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 87.87 | 88.82 |
| HORVU3Hr1G073200.1 | Barley | nucleus | 83.62 | 82.56 |
| Zm00001d012691_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 47.02 | 77.0 |
| Os01t0760300-01 | Rice | plasma membrane | 77.45 | 69.87 |
| OQU87589 | Sorghum | nucleus | 76.6 | 69.63 |
| Zm00001d043383_P001 | Maize | nucleus | 76.6 | 68.83 |
| TraesCS6A01G196000.1 | Wheat | cytosol | 54.26 | 58.49 |
| Bra021162.1-P | Field mustard | nucleus | 43.62 | 47.23 |
| CDY45633 | Canola | nucleus | 51.91 | 46.65 |
| AT1G52240.1 | Thale cress | nucleus | 53.62 | 46.41 |
| Bra018956.1-P | Field mustard | nucleus | 52.77 | 46.27 |
| Bra030396.1-P | Field mustard | nucleus | 51.91 | 45.44 |
| CDX87879 | Canola | nucleus | 51.91 | 43.81 |
| Bra027189.1-P | Field mustard | nucleus | 48.94 | 43.4 |
| TraesCS1A01G392100.1 | Wheat | plastid | 51.49 | 43.14 |
| CDX97723 | Canola | nucleus | 48.72 | 43.05 |
| TraesCS5A01G340900.1 | Wheat | cytosol | 42.55 | 41.84 |
| CDY30136 | Canola | nucleus | 48.94 | 41.82 |
| AT3G16130.1 | Thale cress | nucleus | 47.45 | 41.45 |
| CDY67259 | Canola | nucleus | 52.77 | 41.26 |
| CDY52982 | Canola | nucleus | 52.77 | 41.26 |
| TraesCS3A01G270400.1 | Wheat | plastid | 52.77 | 39.43 |
| CDY28381 | Canola | nucleus | 46.81 | 36.73 |
| CDY20181 | Canola | nucleus | 46.6 | 36.08 |
| TraesCS2A01G408100.1 | Wheat | cytosol | 35.11 | 35.26 |
| TraesCS1A01G208700.1 | Wheat | nucleus | 35.74 | 35.22 |
| TraesCS6A01G405000.1 | Wheat | nucleus | 33.19 | 34.14 |
| TraesCS3A01G364400.1 | Wheat | nucleus | 39.15 | 34.01 |
| TraesCS1A01G280900.2 | Wheat | cytosol | 39.36 | 31.41 |
| TraesCS6A01G270900.1 | Wheat | cytosol | 31.49 | 27.26 |
| Bra021161.1-P | Field mustard | nucleus | 1.49 | 5.26 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G305500.1 | EnsemblPlantsGene:TraesCS3A01G305500 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF26 | PFAM:PF03759 | PFscan:PS51334 | MapMan:27.4.3.1 | : | : |
Description
No Description!
Coordinates
chr3A:-:541365318..541367317
Molecular Weight (calculated)
52396.7 Da
IEP (calculated)
5.195
GRAVY (calculated)
-0.403
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPRSTPRDL PVSSSQRSID RLPFRPVRWL ALKTQEASVV CIALHADIEV IKEKFGKLLL GEDMSGSGKG VPSALALSNA VTNLAAAVFG EQRKLEPMAP
101: DRKARWKKEV GWLLSVADQI VEFVAKKQVL DNGVEMEVMG TQQRRDLQSN IPALRKIDAM LLDYLDGFKD RTDFWYVKRD SCSDAEKEES TEKWWIPIVK
201: VPPNGLAPAS RGWIQHQKEL VNQVLKAAMA INANCLMEMA IPESYLESLP KNGRASLGDA LYRIITDVEF DPDDFLSTVD LTSEHKILDL KDRIEASVII
301: WNRKVHNKDG KSSWGSAVSQ EKREQFEERA QTLLLIIKHR YPGIPQSSLD IAKIQENRDV GFALLESYSR VLESLAFNVM SRIEDVIVAD NVAREKAKKD
401: APAGSSSEPA PQQVPDGPDS MTLLDFMGGN GDSEGRPDDQ SPSAVDPAQD DGRLMKLPNI MTNLFMKTTQ
101: DRKARWKKEV GWLLSVADQI VEFVAKKQVL DNGVEMEVMG TQQRRDLQSN IPALRKIDAM LLDYLDGFKD RTDFWYVKRD SCSDAEKEES TEKWWIPIVK
201: VPPNGLAPAS RGWIQHQKEL VNQVLKAAMA INANCLMEMA IPESYLESLP KNGRASLGDA LYRIITDVEF DPDDFLSTVD LTSEHKILDL KDRIEASVII
301: WNRKVHNKDG KSSWGSAVSQ EKREQFEERA QTLLLIIKHR YPGIPQSSLD IAKIQENRDV GFALLESYSR VLESLAFNVM SRIEDVIVAD NVAREKAKKD
401: APAGSSSEPA PQQVPDGPDS MTLLDFMGGN GDSEGRPDDQ SPSAVDPAQD DGRLMKLPNI MTNLFMKTTQ
001: MVKAMEQEQE TYKSRLFHFK NMNENSASRH VKSWSSDCAM RMDGSDNLDD DDNDMMMFRS QPGKCGSVDR PSLPIGGVTP NRNDKLPRVS SSDSMEALII
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
101: LQAAMEQMKE KFSKLLLGED MSGGGKGVSS ALALSNAITN LAASAFGEQR RLEPMAVDRK TRWRREIGWL ISVADYIVEF APTQQTNKDG TSMEVMSTRQ
201: RTDLLCNIPA LKKLDAMLLD CLDKFKDQDE FYYVKKDSPD SCETRNDEKW WLPAVKVPPN GLSEISRRFL QSQKECVNQV LKAAMAINAQ VLSEMEIPES
301: YLESLPKNGR ASLGDVIYRM ITVEMFDADQ FLIEMDLSSE HKILDLKNRI EASIVIWKRK MVQKDTKSPW GSTVSIEKRE QFEERAETIL LLLKQGFPGI
401: SQSSLDISKI QFNRDVGLAI LESYSRVLES LAHTVMSRIE DVLYADQLTQ EPTNNAPSKN RYSLKENEKL REERLSFTED MASGTLSDVM QWGNKNNEMK
501: KESFFGDREK PLLSKVTGIM TNNKKSSYLD NLGAMRSPTA RYS
Arabidopsis Description
ROPGEF11ROPGEF11 [Source:UniProtKB/TrEMBL;Acc:A0A178W8V0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.